Detailed information NTG0872788

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: RCF70_RS06030
• Genome accession: NZ_CP133247
• Coordinates: 1228809..1229126 (+)
• Length: 105 a.a.
• NCBI ID: WP_107358850.1
• Uniprot ID: -
• Organism: Staphylococcus chromogenes strain TA
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1223809..1234126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RCF70_RS06000 (RCF70_05965)	-	1224596..1224799 (+)	204	WP_037573910.1	YqgQ family protein	-
RCF70_RS06005 (RCF70_05970)	-	1224796..1225782 (+)	987	WP_107358846.1	ROK family glucokinase	-
RCF70_RS06010 (RCF70_05975)	-	1225783..1226094 (+)	312	WP_107358847.1	MTH1187 family thiamine-binding protein	-
RCF70_RS06015 (RCF70_05980)	-	1226108..1226731 (+)	624	WP_107358848.1	MBL fold metallo-hydrolase	-
RCF70_RS06020 (RCF70_05985)	comGA	1226784..1227758 (+)	975	Protein_1147	competence type IV pilus ATPase ComGA	-
RCF70_RS06025 (RCF70_05990)	comGB	1227727..1228794 (+)	1068	WP_107358849.1	competence type IV pilus assembly protein ComGB	-
RCF70_RS06030 (RCF70_05995)	comGC	1228809..1229126 (+)	318	WP_107358850.1	competence type IV pilus major pilin ComGC	Machinery gene
RCF70_RS06035 (RCF70_06000)	comGD	1229116..1229547 (+)	432	WP_241955825.1	competence type IV pilus minor pilin ComGD	-
RCF70_RS06040 (RCF70_06005)	-	1229740..1230225 (+)	486	WP_157946091.1	competence type IV pilus minor pilin ComGF	-
RCF70_RS06045 (RCF70_06010)	-	1230390..1230914 (+)	525	WP_107358853.1	shikimate kinase	-
RCF70_RS06050 (RCF70_06015)	gcvT	1231067..1232158 (+)	1092	WP_107358854.1	glycine cleavage system aminomethyltransferase GcvT	-
RCF70_RS06055 (RCF70_06020)	gcvPA	1232171..1233520 (+)	1350	WP_107358855.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11786.98 Da
• Isoelectric Point: 9.1066

>NTDB_id=872788 RCF70_RS06030 WP_107358850.1 1228809..1229126(+) (comGC) [Staphylococcus chromogenes strain TA]
MKLFKKLKENKGFTLIEMLLVLLIISVLLILIIPNIAKQSEHIQKTGCSAQLKLVESQIEAYTLKFNRNPSTIDELVQEG
YIKENQKSCKNGDTIILRGGEAVVS

Nucleotide

• Length: 318 bp

>NTDB_id=872788 RCF70_RS06030 WP_107358850.1 1228809..1229126(+) (comGC) [Staphylococcus chromogenes strain TA]
ATGAAATTATTTAAAAAGTTAAAAGAAAACAAGGGGTTTACGTTAATTGAAATGCTTTTAGTTTTGTTAATTATAAGTGT
ACTTTTAATACTAATTATCCCTAATATTGCTAAACAATCAGAACATATTCAAAAAACAGGTTGTTCAGCACAACTTAAAT
TAGTCGAAAGTCAAATTGAAGCATATACTTTGAAATTTAATCGAAATCCTTCAACAATCGACGAACTTGTTCAAGAAGGT
TATATCAAAGAAAATCAAAAATCATGCAAAAATGGAGACACCATCATATTACGTGGCGGAGAAGCCGTTGTTTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (10-32)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus N315	67.961	98.095	0.667
comGC	Staphylococcus aureus MW2	67.961	98.095	0.667
comYC	Streptococcus gordonii str. Challis substr. CH1	50	81.905	0.41
comGC	Bacillus subtilis subsp. subtilis str. 168	44.681	89.524	0.4
comGC/cglC	Streptococcus pneumoniae R6	47.674	81.905	0.39
comGC/cglC	Streptococcus pneumoniae TIGR4	47.674	81.905	0.39
comGC/cglC	Streptococcus pneumoniae Rx1	47.674	81.905	0.39
comGC/cglC	Streptococcus pneumoniae D39	47.674	81.905	0.39
comGC/cglC	Streptococcus mitis SK321	49.383	77.143	0.381
comYC	Streptococcus suis isolate S10	51.316	72.381	0.371
comGC/cglC	Streptococcus mitis NCTC 12261	51.316	72.381	0.371
comYC	Streptococcus mutans UA140	50	72.381	0.362
comYC	Streptococcus mutans UA159	50	72.381	0.362