Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RCG00_RS09015 Genome accession   NZ_CP133217
Coordinates   1596977..1598227 (-) Length   416 a.a.
NCBI ID   WP_202716153.1    Uniprot ID   A0AA51MUA6
Organism   Thiothrix subterranea strain DNT52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591977..1603227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RCG00_RS08990 (RCG00_08990) - 1592006..1593532 (-) 1527 WP_202716148.1 glucan biosynthesis protein -
  RCG00_RS08995 (RCG00_08995) opgC 1593723..1594904 (+) 1182 WP_308135536.1 OpgC domain-containing protein -
  RCG00_RS09000 (RCG00_09000) ubiE 1594850..1595602 (-) 753 WP_308135537.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE -
  RCG00_RS09005 (RCG00_09005) - 1595687..1596082 (+) 396 WP_308135538.1 hypothetical protein -
  RCG00_RS09010 (RCG00_09010) pilD 1596087..1596962 (-) 876 WP_308135539.1 A24 family peptidase Machinery gene
  RCG00_RS09015 (RCG00_09015) pilC 1596977..1598227 (-) 1251 WP_202716153.1 type II secretion system F family protein Machinery gene
  RCG00_RS09020 (RCG00_09020) pilB 1598321..1600042 (-) 1722 WP_308135540.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RCG00_RS09025 (RCG00_09025) - 1600123..1601679 (-) 1557 WP_308135541.1 AAA family ATPase -
  RCG00_RS09030 (RCG00_09030) - 1601789..1602691 (+) 903 WP_202716156.1 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45404.28 Da        Isoelectric Point: 10.2164

>NTDB_id=872528 RCG00_RS09015 WP_202716153.1 1596977..1598227(-) (pilC) [Thiothrix subterranea strain DNT52]
MQSNTLKKPVAGKKPAPSEAQAIYKWEGVNRNGVKMRGETEAVNPNWLRAELRRKGINPGRIYRKPKPLFKAAIKPGDIA
QFARQLTTMMRSGVPMVQSLELMASGGDNASVRELVNKLRADIEGGASLGSALAKHPKYFDKLFVNLVKAGEQAGTLETM
LEKVATYKEKSEALKAKVKSAMMYPIIVVVAAVVVSAILLIWVIPQFKEVFSSFGADLPAFTLLVISFSDWLVANWWQPI
LMFVAVGTGFTQARQRSPAFDRFVDKASLKIPIMGNILNLSAVARFARTLATMFAAGVPLVEAMDSVAGATGNALYEEAS
RRIQDDTARGVQLNTSMQTTQLFPNMMVQMTRIGEESGRLEEMLAKVADYYEAQVDGLVDTLAKQIEPLIMAVLGGIVGS
LVIAMYLPIFKLGAVV

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=872528 RCG00_RS09015 WP_202716153.1 1596977..1598227(-) (pilC) [Thiothrix subterranea strain DNT52]
ATGCAAAGCAACACCTTGAAAAAACCGGTAGCAGGCAAAAAACCCGCCCCCAGCGAAGCACAAGCCATTTACAAGTGGGA
AGGCGTTAACCGCAATGGGGTGAAAATGCGCGGCGAAACCGAAGCCGTGAACCCCAACTGGTTACGCGCTGAACTGCGAC
GCAAAGGCATTAATCCGGGGCGTATCTACCGCAAACCCAAACCCTTGTTCAAAGCCGCCATCAAACCGGGGGATATTGCG
CAATTTGCCCGCCAATTGACCACCATGATGCGTTCCGGCGTACCCATGGTGCAATCCTTGGAACTCATGGCTTCCGGGGG
CGATAACGCCTCAGTCCGCGAATTGGTGAACAAATTACGTGCAGACATTGAAGGCGGTGCCAGTTTAGGTTCAGCGTTAG
CCAAACACCCCAAGTATTTCGACAAACTTTTCGTCAACTTGGTGAAAGCGGGTGAACAGGCCGGTACGCTGGAAACCATG
CTGGAAAAAGTCGCCACCTACAAAGAAAAAAGCGAAGCGCTCAAAGCCAAAGTCAAAAGTGCGATGATGTACCCGATTAT
CGTCGTGGTTGCTGCCGTGGTGGTATCGGCGATTTTGCTGATCTGGGTTATTCCGCAGTTTAAGGAAGTGTTTAGCAGCT
TTGGCGCAGACTTGCCTGCTTTCACGCTATTGGTCATTTCATTTTCAGATTGGCTGGTCGCTAACTGGTGGCAACCCATT
CTGATGTTTGTTGCAGTGGGAACCGGCTTCACCCAAGCGCGGCAACGCTCGCCAGCCTTTGACCGTTTCGTGGATAAAGC
GTCGTTAAAAATCCCGATTATGGGTAATATCCTGAACTTGTCGGCGGTCGCCCGGTTTGCGCGTACCCTAGCCACCATGT
TTGCGGCGGGTGTGCCGTTGGTGGAAGCGATGGATTCGGTGGCGGGCGCGACCGGCAATGCCTTGTATGAAGAAGCGTCG
CGGCGGATTCAAGACGATACCGCTCGCGGGGTGCAATTGAACACCTCCATGCAAACCACGCAATTATTCCCGAATATGAT
GGTACAAATGACCCGTATCGGTGAAGAATCCGGGCGTTTGGAAGAAATGTTGGCAAAAGTAGCCGATTATTACGAAGCAC
AGGTTGACGGCTTGGTCGACACCTTGGCAAAACAAATTGAACCGCTGATCATGGCGGTATTGGGCGGTATTGTGGGCAGT
TTGGTCATCGCCATGTACTTGCCCATCTTTAAACTTGGGGCTGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.025

95.673

0.526
  pilC Acinetobacter baylyi ADP1

50.124

96.875

0.486
  pilC Acinetobacter baumannii D1279779

50.126

95.433

0.478
  pilC Legionella pneumophila strain ERS1305867

48.872

95.913

0.469
  pilG Neisseria meningitidis 44/76-A

43.325

95.433

0.413
  pilG Neisseria gonorrhoeae MS11

43.147

94.712

0.409
  pilC Vibrio cholerae strain A1552

39.899

95.192

0.38
  pilC Vibrio campbellii strain DS40M4

39.798

95.433

0.38
  pilC Thermus thermophilus HB27

37.5

96.154

0.361