Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QL104_RS26915 Genome accession   NZ_CP133164
Coordinates   5777349..5778566 (+) Length   405 a.a.
NCBI ID   WP_282877141.1    Uniprot ID   -
Organism   Pseudomonas piscis strain 75     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5772349..5783566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL104_RS26900 (QL104_26900) - 5772955..5775873 (+) 2919 WP_282877142.1 DUF748 domain-containing protein -
  QL104_RS26905 (QL104_26905) - 5776073..5776429 (-) 357 WP_022641055.1 BON domain-containing protein -
  QL104_RS26910 (QL104_26910) - 5776645..5777061 (-) 417 WP_085597066.1 pilin -
  QL104_RS26915 (QL104_26915) pilC 5777349..5778566 (+) 1218 WP_282877141.1 type II secretion system F family protein Machinery gene
  QL104_RS26920 (QL104_26920) pilD 5778569..5779441 (+) 873 WP_282877140.1 A24 family peptidase Machinery gene
  QL104_RS26925 (QL104_26925) coaE 5779438..5780061 (+) 624 WP_085597063.1 dephospho-CoA kinase -
  QL104_RS26930 (QL104_26930) yacG 5780058..5780261 (+) 204 WP_085597062.1 DNA gyrase inhibitor YacG -
  QL104_RS26935 (QL104_26935) - 5780281..5780496 (-) 216 WP_022641062.1 hypothetical protein -
  QL104_RS26940 (QL104_26940) - 5780560..5781249 (-) 690 WP_085597061.1 energy-coupling factor ABC transporter permease -
  QL104_RS26945 (QL104_26945) - 5781246..5781713 (-) 468 WP_031320553.1 hypothetical protein -
  QL104_RS26950 (QL104_26950) - 5781864..5782493 (+) 630 WP_085597060.1 DUF1780 domain-containing protein -
  QL104_RS26955 (QL104_26955) - 5782683..5782856 (+) 174 WP_022641066.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43943.40 Da        Isoelectric Point: 10.5755

>NTDB_id=872229 QL104_RS26915 WP_282877141.1 5777349..5778566(+) (pilC) [Pseudomonas piscis strain 75]
MTVQPPATSTYVWQGTDNQGHALQGELVAASRALARARLRRQGIVPSRIRRKSPGLPRLGQRIRPRDIALFARQLATLFQ
AGVPLLQSLEIIAESFGQPSMRQLLASLKRDIEAGSSLASALRRHPRHFDPLYCNLVEAGEQAGALDTLLERVASYQEQS
ERLKARLYKAMVYPLAVIGVAIIVSSILLLKVVPQFQSLFAGFNAELPLLTRWVIGLSHFLQDHGASLLAASLGLGFGAR
LAYRRSPRLRDAVDIVLLRLPLTGTLLNKAAVARLARTLATTFAAGVPLVQALESVAGASGNSVHRRAVERIQVQVASGM
QLNFAMRASGVFPEMAIQMTAIGEESGTLDHLLEKIAMHYESEVDNLVDSLTSLMEPLIMVLLGSIVGALVLAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=872229 QL104_RS26915 WP_282877141.1 5777349..5778566(+) (pilC) [Pseudomonas piscis strain 75]
ATGACGGTACAACCACCCGCCACCAGCACCTATGTCTGGCAGGGCACCGATAACCAGGGCCATGCCCTGCAAGGCGAATT
GGTTGCCGCCAGCCGGGCATTGGCCAGGGCCCGCCTGCGCCGACAGGGCATAGTCCCGAGCCGGATCCGGCGCAAGTCCC
CCGGCCTGCCGCGCCTGGGACAACGGATCAGGCCCCGGGACATCGCCCTGTTCGCCCGGCAACTGGCGACCTTGTTCCAG
GCCGGCGTACCCCTGCTGCAATCCCTGGAAATAATCGCCGAAAGCTTCGGACAGCCATCCATGCGCCAACTGCTGGCCAG
CCTCAAGCGCGATATCGAGGCTGGCTCCAGCCTGGCCAGCGCATTGCGCCGGCACCCGCGCCATTTTGACCCGCTGTACT
GCAACCTGGTAGAAGCCGGGGAGCAGGCCGGGGCCCTGGATACCCTGCTGGAGCGGGTCGCCAGCTACCAGGAGCAGAGC
GAGCGCCTCAAGGCCCGGTTGTACAAGGCCATGGTCTATCCCCTGGCGGTGATCGGAGTGGCGATCATCGTCAGCAGCAT
CCTGCTGCTCAAGGTCGTCCCGCAGTTCCAGAGCCTGTTCGCCGGCTTCAATGCCGAACTCCCCCTGCTGACCCGTTGGG
TCATCGGCCTCTCGCACTTTCTCCAGGATCATGGCGCGAGCCTGCTGGCTGCCAGCCTGGGGCTGGGTTTCGGCGCGCGC
CTGGCCTATCGCCGCTCGCCCCGTCTGCGCGATGCCGTGGATATCGTCCTGCTGCGCCTCCCCCTGACCGGCACCTTGTT
GAACAAGGCCGCCGTGGCCCGCCTGGCCCGGACCCTGGCCACCACCTTCGCCGCCGGCGTGCCGCTGGTACAGGCCCTGG
AATCGGTGGCGGGGGCCAGCGGCAACAGCGTGCATCGCCGGGCAGTGGAGCGGATCCAGGTACAAGTCGCCAGCGGCATG
CAATTGAACTTCGCCATGCGCGCCAGCGGCGTCTTCCCGGAAATGGCGATCCAGATGACCGCCATTGGCGAAGAGTCCGG
CACCCTCGATCATCTGCTGGAAAAAATCGCCATGCACTATGAGAGCGAGGTGGACAACCTGGTGGACAGCCTGACCAGCC
TCATGGAGCCTTTGATCATGGTGCTGCTGGGCAGTATCGTCGGAGCCCTGGTGCTAGCCATGTACCTGCCCATCTTTCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.533

98.272

0.556
  pilC Acinetobacter baylyi ADP1

52.01

98.272

0.511
  pilC Acinetobacter baumannii D1279779

51.508

98.272

0.506
  pilC Legionella pneumophila strain ERS1305867

46.305

100

0.464
  pilG Neisseria meningitidis 44/76-A

41.294

99.259

0.41
  pilG Neisseria gonorrhoeae MS11

41.562

98.025

0.407
  pilC Vibrio campbellii strain DS40M4

40.796

99.259

0.405
  pilC Vibrio cholerae strain A1552

41.624

97.284

0.405
  pilC Thermus thermophilus HB27

38.945

98.272

0.383