Detailed information NTG0872230

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QL104_RS26920
• Genome accession: NZ_CP133164
• Coordinates: 5778569..5779441 (+)
• Length: 290 a.a.
• NCBI ID: WP_282877140.1
• Uniprot ID: -
• Organism: Pseudomonas piscis strain 75
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5773569..5784441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QL104_RS26905 (QL104_26905)	-	5776073..5776429 (-)	357	WP_022641055.1	BON domain-containing protein	-
QL104_RS26910 (QL104_26910)	-	5776645..5777061 (-)	417	WP_085597066.1	pilin	-
QL104_RS26915 (QL104_26915)	pilC	5777349..5778566 (+)	1218	WP_282877141.1	type II secretion system F family protein	Machinery gene
QL104_RS26920 (QL104_26920)	pilD	5778569..5779441 (+)	873	WP_282877140.1	A24 family peptidase	Machinery gene
QL104_RS26925 (QL104_26925)	coaE	5779438..5780061 (+)	624	WP_085597063.1	dephospho-CoA kinase	-
QL104_RS26930 (QL104_26930)	yacG	5780058..5780261 (+)	204	WP_085597062.1	DNA gyrase inhibitor YacG	-
QL104_RS26935 (QL104_26935)	-	5780281..5780496 (-)	216	WP_022641062.1	hypothetical protein	-
QL104_RS26940 (QL104_26940)	-	5780560..5781249 (-)	690	WP_085597061.1	energy-coupling factor ABC transporter permease	-
QL104_RS26945 (QL104_26945)	-	5781246..5781713 (-)	468	WP_031320553.1	hypothetical protein	-
QL104_RS26950 (QL104_26950)	-	5781864..5782493 (+)	630	WP_085597060.1	DUF1780 domain-containing protein	-
QL104_RS26955 (QL104_26955)	-	5782683..5782856 (+)	174	WP_022641066.1	DUF3094 family protein	-
QL104_RS26960 (QL104_26960)	-	5782917..5784215 (+)	1299	WP_103326370.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31876.06 Da
• Isoelectric Point: 7.7677

>NTDB_id=872230 QL104_RS26920 WP_282877140.1 5778569..5779441(+) (pilD) [Pseudomonas piscis strain 75]
MSLTEVLSLYPLAFVLASLVLGLIVGSFLNVLAWRLPRMLERDWRAQAHEILGLPAEPVTTPYNLLLPHSHCPHCAQPVR
SWHNVPLLGYLWLGGRCAHCKTRISVRYPLVELACGLLSAFVAWHFGFGWTAGLLLLLSWGLLGMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFGLLASLEDAIWGAVVGYLLLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQVLPLTLLLASLAG
ALIGSLLLRLRQAKGSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=872230 QL104_RS26920 WP_282877140.1 5778569..5779441(+) (pilD) [Pseudomonas piscis strain 75]
ATGTCCTTGACTGAAGTCCTGAGCCTTTACCCCCTGGCGTTCGTGCTGGCATCCCTGGTACTGGGGCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGCCTGGCGCCTGCCGCGCATGCTCGAGCGCGATTGGCGCGCCCAGGCCCATGAAATCCTGGGGC
TGCCCGCGGAGCCCGTGACAACTCCCTACAACCTGTTGCTCCCCCACTCTCACTGCCCGCATTGCGCACAGCCCGTGCGC
TCCTGGCATAACGTCCCCCTGCTCGGCTACCTGTGGCTGGGCGGTCGCTGCGCCCACTGCAAGACCCGGATCAGCGTGCG
CTACCCACTGGTCGAGCTGGCGTGTGGACTGCTTTCGGCATTCGTGGCCTGGCATTTCGGCTTCGGCTGGACGGCCGGCC
TGCTGTTGCTATTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCACCAATTGCTGCCGGATGTGCTGGTA
CTGCCCCTGTTATGGCTGGGCTTGATCGTCAACAGCTTCGGCCTGCTGGCGAGCCTGGAGGACGCCATCTGGGGCGCGGT
GGTGGGTTACCTGCTGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACTGGCAAGGACGGCATGGGCCATGGCGATT
TCAAGCTGCTGGCGATGCTAGGGGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCTTGCTGCTGGCCTCCCTGGCCGGG
GCACTGATTGGCAGCCTATTGTTGCGCCTGCGCCAGGCCAAGGGCTCGACTCCGATCCCCTTCGGCCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.704	97.931	0.497
pilD	Vibrio campbellii strain DS40M4	46.809	97.241	0.455
pilD	Acinetobacter nosocomialis M2	48.175	94.483	0.455
pilD	Acinetobacter baumannii D1279779	47.445	94.483	0.448
pilD	Neisseria gonorrhoeae MS11	46.296	93.103	0.431