Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RBH92_RS01190 Genome accession   NZ_CP133083
Coordinates   231391..232614 (+) Length   407 a.a.
NCBI ID   WP_307932914.1    Uniprot ID   -
Organism   Nitrosomonas sp. sh817     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 226391..237614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH92_RS01170 (RBH92_01175) - 227089..227889 (+) 801 WP_307932910.1 uroporphyrinogen-III synthase -
  RBH92_RS01175 (RBH92_01180) - 228038..229213 (+) 1176 WP_307932911.1 heme biosynthesis HemY N-terminal domain-containing protein -
  RBH92_RS01180 (RBH92_01185) - 229210..230268 (-) 1059 WP_307932912.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -
  RBH92_RS01185 (RBH92_01190) - 230313..231206 (+) 894 WP_307932913.1 SDR family oxidoreductase -
  RBH92_RS01190 (RBH92_01195) pilC 231391..232614 (+) 1224 WP_307932914.1 type II secretion system F family protein Machinery gene
  RBH92_RS01195 (RBH92_01200) pilD 232660..233520 (+) 861 WP_307933906.1 A24 family peptidase Machinery gene
  RBH92_RS01200 (RBH92_01205) coaE 233524..234129 (+) 606 WP_307932915.1 dephospho-CoA kinase -
  RBH92_RS01205 (RBH92_01210) zapD 234251..235006 (+) 756 WP_307932916.1 cell division protein ZapD -
  RBH92_RS01210 (RBH92_01215) - 235383..237230 (+) 1848 WP_307932917.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44350.32 Da        Isoelectric Point: 9.4928

>NTDB_id=871688 RBH92_RS01190 WP_307932914.1 231391..232614(+) (pilC) [Nitrosomonas sp. sh817]
MATLIAQSEKKLKEINYSWEGKDKTGKQLKGEMRAAGTVVVTATLRRQGIKVTKIKKTQSGGKITDKDITLFTRQLATMM
KSGVPLLQAFDIVARGHTNRAVSRLLIDIKTDVETGSNLTDAFRKYPLYFDALYCNLVGAGEAAGILDSILDRLATYKEK
IQAIKGKIKSALFYPISIIAVAFIITAVIMIFVIPAFKDLFEGFGAELPAPTLLVMTVSDFFVDYWWAIFGIVGGGVYGF
LYAWKRSVPMQRIMDRFMLKLPIFGEVIRKATIARWSRTLSTMFAAGVPLVDSLDSVAGAAGNYVYYEATKSIQLEVSTG
NSLMASMAGVNVFPSMVIQMVAIGEEAGSLDSMLGKIADFYEAEVDDAVAALSSLMEPMIMVVLGTLIGGMVVAMYLPIF
KMGSVVS

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=871688 RBH92_RS01190 WP_307932914.1 231391..232614(+) (pilC) [Nitrosomonas sp. sh817]
ATGGCGACCCTAATTGCACAATCAGAAAAGAAACTGAAAGAAATTAATTATTCGTGGGAAGGTAAAGATAAAACAGGGAA
ACAACTAAAAGGAGAAATGCGGGCTGCTGGAACTGTCGTTGTGACTGCGACATTGCGCCGGCAAGGAATAAAAGTAACAA
AAATAAAGAAAACCCAGTCCGGCGGTAAGATCACCGATAAAGACATTACGCTCTTTACGCGTCAATTGGCAACCATGATG
AAGTCCGGCGTGCCGTTATTACAAGCTTTCGATATCGTTGCCAGAGGACATACCAACCGCGCTGTAAGTAGGTTATTGAT
TGATATAAAAACAGATGTGGAAACAGGTAGTAACTTGACGGATGCATTTCGAAAATATCCACTTTACTTTGATGCGCTCT
ATTGTAACCTTGTTGGAGCGGGCGAGGCCGCAGGGATACTCGATAGTATTTTAGATCGGCTAGCAACCTATAAAGAAAAA
ATTCAGGCGATCAAGGGAAAAATTAAATCCGCGCTTTTCTATCCGATTTCAATCATCGCAGTGGCTTTTATCATTACTGC
CGTGATAATGATTTTTGTGATTCCGGCTTTTAAAGATTTGTTTGAAGGTTTCGGTGCCGAGTTGCCGGCTCCGACACTTC
TAGTCATGACAGTCTCTGATTTTTTTGTGGATTATTGGTGGGCCATTTTTGGGATTGTTGGCGGCGGAGTCTATGGATTC
CTGTATGCATGGAAGAGATCGGTTCCGATGCAACGTATTATGGATCGTTTCATGTTAAAACTGCCGATTTTTGGAGAGGT
CATCCGTAAAGCTACTATTGCACGTTGGTCTCGTACACTTTCAACAATGTTCGCAGCGGGGGTTCCATTAGTTGATTCAT
TAGATTCCGTCGCTGGCGCGGCTGGAAATTATGTTTATTATGAAGCAACCAAGAGCATTCAGCTAGAGGTCAGTACTGGT
AATAGCTTGATGGCTTCGATGGCTGGTGTTAATGTCTTTCCAAGCATGGTCATCCAAATGGTGGCCATTGGTGAGGAGGC
GGGGTCGCTGGATTCGATGTTGGGTAAAATCGCCGATTTCTACGAAGCGGAAGTGGATGATGCGGTTGCCGCACTTTCAA
GTTTGATGGAACCAATGATTATGGTTGTTTTGGGAACATTGATCGGCGGTATGGTGGTCGCCATGTATTTACCCATTTTC
AAGATGGGTTCTGTCGTTAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.266

97.789

0.521
  pilG Neisseria gonorrhoeae MS11

53.015

97.789

0.518
  pilG Neisseria meningitidis 44/76-A

52.513

97.789

0.514
  pilC Pseudomonas stutzeri DSM 10701

51.238

99.263

0.509
  pilC Acinetobacter baylyi ADP1

50.882

97.543

0.496
  pilC Acinetobacter baumannii D1279779

50.63

97.543

0.494
  pilC Vibrio cholerae strain A1552

40.302

97.543

0.393
  pilC Vibrio campbellii strain DS40M4

39.152

98.526

0.386
  pilC Thermus thermophilus HB27

37.845

98.034

0.371