Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RBH92_RS01195 Genome accession   NZ_CP133083
Coordinates   232660..233520 (+) Length   286 a.a.
NCBI ID   WP_307933906.1    Uniprot ID   -
Organism   Nitrosomonas sp. sh817     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227660..238520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBH92_RS01175 (RBH92_01180) - 228038..229213 (+) 1176 WP_307932911.1 heme biosynthesis HemY N-terminal domain-containing protein -
  RBH92_RS01180 (RBH92_01185) - 229210..230268 (-) 1059 WP_307932912.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -
  RBH92_RS01185 (RBH92_01190) - 230313..231206 (+) 894 WP_307932913.1 SDR family oxidoreductase -
  RBH92_RS01190 (RBH92_01195) pilC 231391..232614 (+) 1224 WP_307932914.1 type II secretion system F family protein Machinery gene
  RBH92_RS01195 (RBH92_01200) pilD 232660..233520 (+) 861 WP_307933906.1 A24 family peptidase Machinery gene
  RBH92_RS01200 (RBH92_01205) coaE 233524..234129 (+) 606 WP_307932915.1 dephospho-CoA kinase -
  RBH92_RS01205 (RBH92_01210) zapD 234251..235006 (+) 756 WP_307932916.1 cell division protein ZapD -
  RBH92_RS01210 (RBH92_01215) - 235383..237230 (+) 1848 WP_307932917.1 GGDEF domain-containing protein -
  RBH92_RS01215 (RBH92_01220) - 237328..237678 (-) 351 WP_307932918.1 hypothetical protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31602.53 Da        Isoelectric Point: 6.0905

>NTDB_id=871689 RBH92_RS01195 WP_307933906.1 232660..233520(+) (pilD) [Nitrosomonas sp. sh817]
MAYQTMLQEEPGIFIMAASILGLLVGSFLNVVIYRLPEMMRRNWSEQCAELRGEAFEKQPAFNLISPRSACPECGHKISV
WENIPIISYLVLRGRCSQCHERIPLRYPLVEAVTAVLSGVVAWHFGYGIITAAVLIFVWALIVLAVIDINTQLLPDDITL
PLLWLGLLINLNDVFTDSQSSIIGAVAGYLSLWSIYWCFKLLTGKEGMGYGDFKLLSAIGAWLGWSMLPVVIIFSSLVGA
LVGIGLIIAAKLQKNIPIPFGPYLVGGALIALFWGEELTHRYLGLF

Nucleotide


Download         Length: 861 bp        

>NTDB_id=871689 RBH92_RS01195 WP_307933906.1 232660..233520(+) (pilD) [Nitrosomonas sp. sh817]
ATGGCCTATCAAACTATGCTGCAGGAGGAGCCAGGAATTTTTATCATGGCAGCCTCAATACTAGGATTGCTGGTTGGAAG
TTTTTTAAATGTTGTCATATACCGCTTGCCGGAAATGATGCGAAGAAATTGGTCTGAACAATGTGCGGAACTGCGAGGCG
AGGCGTTCGAAAAACAGCCAGCGTTTAATCTAATTTCTCCACGATCTGCCTGTCCCGAGTGCGGACATAAAATATCCGTA
TGGGAAAATATCCCGATTATCAGTTATCTTGTGCTGCGAGGACGTTGTTCGCAATGCCATGAACGGATTCCTTTGCGTTA
CCCGCTCGTTGAAGCCGTTACGGCTGTACTGAGTGGTGTCGTTGCCTGGCATTTTGGTTATGGCATTATTACCGCTGCAG
TATTAATTTTTGTGTGGGCACTTATTGTTCTGGCGGTTATTGATATAAACACACAATTGCTGCCAGATGATATAACGCTA
CCGTTGCTTTGGTTGGGATTATTGATCAATTTGAACGATGTTTTTACGGATTCTCAATCCTCAATTATTGGAGCTGTTGC
CGGTTATTTATCGTTGTGGTCAATTTATTGGTGTTTCAAGCTTCTAACGGGTAAAGAAGGTATGGGGTATGGCGATTTCA
AATTGCTATCCGCGATCGGTGCATGGTTAGGCTGGAGTATGCTCCCAGTAGTGATTATTTTTTCATCCCTTGTAGGAGCT
TTAGTTGGTATTGGACTGATAATTGCGGCTAAGCTACAAAAAAATATTCCAATACCTTTTGGTCCTTATCTGGTTGGCGG
CGCTCTAATAGCTTTATTTTGGGGTGAAGAACTAACCCATCGTTATCTTGGTTTGTTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

50

99.301

0.497
  pilD Vibrio cholerae strain A1552

50.725

96.503

0.49
  pilD Neisseria gonorrhoeae MS11

52

87.413

0.455
  pilD Acinetobacter baumannii D1279779

45.756

94.755

0.434
  pilD Acinetobacter nosocomialis M2

45.756

94.755

0.434