Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RAN89_RS07350 Genome accession   NZ_CP132507
Coordinates   1494296..1495513 (-) Length   405 a.a.
NCBI ID   WP_313868949.1    Uniprot ID   -
Organism   Rhodoferax mekongensis strain TBRC 17307     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1489296..1500513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAN89_RS07320 (RAN89_07325) - 1490456..1491331 (+) 876 WP_313868943.1 ATP-binding protein -
  RAN89_RS07325 (RAN89_07330) - 1491328..1491831 (+) 504 WP_313868944.1 NUDIX domain-containing protein -
  RAN89_RS07330 (RAN89_07335) - 1491833..1492030 (-) 198 WP_313868945.1 DNA gyrase inhibitor YacG -
  RAN89_RS07335 (RAN89_07340) zapD 1492060..1492815 (-) 756 WP_313868946.1 cell division protein ZapD -
  RAN89_RS07340 (RAN89_07345) coaE 1492838..1493446 (-) 609 WP_313868947.1 dephospho-CoA kinase -
  RAN89_RS07345 (RAN89_07350) pilD 1493451..1494296 (-) 846 WP_313868948.1 A24 family peptidase Machinery gene
  RAN89_RS07350 (RAN89_07355) pilC 1494296..1495513 (-) 1218 WP_313868949.1 type II secretion system F family protein Machinery gene
  RAN89_RS07355 (RAN89_07360) pilB 1495532..1497265 (-) 1734 WP_313868950.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RAN89_RS07360 (RAN89_07365) rfbC 1497372..1497920 (-) 549 WP_313868951.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  RAN89_RS07365 (RAN89_07370) rfbA 1497920..1498807 (-) 888 WP_313869357.1 glucose-1-phosphate thymidylyltransferase RfbA -
  RAN89_RS07370 (RAN89_07375) rfbD 1498822..1499727 (-) 906 WP_313868952.1 dTDP-4-dehydrorhamnose reductase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44299.07 Da        Isoelectric Point: 9.3726

>NTDB_id=869310 RAN89_RS07350 WP_313868949.1 1494296..1495513(-) (pilC) [Rhodoferax mekongensis strain TBRC 17307]
MATAKSADTKDAVFEWEGKDRNGKQVRGEARAVGENQVKSMLRRQGVTPTKIKKRRMRSGKSIKPKDMAIFTRQLATMMK
AGVPLLQAFDIVGRGNPNPSVTKLLNDIRSDVETGTSLSAAFRKYPLYFDNLYCNLVEAGESAGILDQLLDRLAVYMEKT
EAIKSKIKSALMYPIAVLVVAFVVVSVIMIFVIPSFKQVFTSFGGELPAPTLFVIAMSEIFIEYWWLIFGGLGGGIYFFL
QAWKRNEKVQAFMDRLMLKLPIFGVMVDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNIVYQSATQKIQQEVSTGT
SLTAAMTNANLFPSMVLQMCAIGEESGSIDHMLGKAADFFEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=869310 RAN89_RS07350 WP_313868949.1 1494296..1495513(-) (pilC) [Rhodoferax mekongensis strain TBRC 17307]
ATGGCAACAGCGAAATCTGCGGATACCAAAGACGCAGTGTTTGAATGGGAAGGCAAGGACCGTAACGGCAAGCAAGTGCG
GGGGGAAGCCCGCGCCGTGGGTGAGAACCAGGTCAAGTCCATGCTGCGCCGCCAGGGCGTCACACCCACCAAGATCAAGA
AGCGCCGCATGCGCTCGGGCAAGTCCATCAAGCCCAAAGACATGGCGATTTTTACACGCCAACTGGCGACGATGATGAAG
GCCGGTGTCCCCTTGCTGCAGGCGTTTGACATTGTGGGGCGTGGCAACCCTAACCCGAGCGTAACCAAATTGCTCAACGA
CATACGGTCCGATGTGGAGACGGGTACCTCGCTGAGCGCTGCATTCCGCAAATACCCACTTTACTTTGACAATTTGTATT
GCAACTTGGTCGAGGCAGGTGAATCCGCGGGTATTCTGGACCAGTTGCTGGACCGCTTGGCCGTTTACATGGAGAAGACA
GAGGCCATCAAGTCCAAAATCAAGTCCGCATTGATGTACCCGATTGCCGTGCTGGTAGTGGCTTTTGTCGTGGTTTCGGT
CATCATGATTTTCGTGATTCCATCCTTTAAGCAAGTGTTTACTTCCTTCGGTGGGGAGTTACCGGCGCCGACACTGTTTG
TGATCGCCATGAGTGAGATATTCATTGAATATTGGTGGCTCATTTTTGGTGGGCTCGGCGGCGGCATCTACTTCTTCTTG
CAGGCTTGGAAGCGCAATGAAAAAGTACAGGCCTTCATGGATCGACTGATGTTGAAATTGCCCATCTTCGGGGTAATGGT
TGACAAAAGCTGCGTGGCTCGGTGGACCCGGACACTGTCCACCATGTTTGCAGCCGGAGTGCCTCTGGTCGAAGCCCTGG
ACTCTGTAGGAGGCGCTTCAGGGAACATTGTTTATCAAAGCGCTACACAGAAGATTCAACAGGAAGTTTCTACAGGTACA
TCTTTAACGGCGGCGATGACCAATGCCAATCTATTCCCGTCCATGGTCCTGCAGATGTGCGCAATCGGCGAAGAATCCGG
CTCGATTGATCACATGTTGGGCAAGGCTGCCGACTTTTTTGAGGCCGAAGTGGATGACATGGTCGCAGGCATTTCCAGTC
TGATGGAACCCATCATCATCGTGGTGTTGGGTACCGTCATTGGAGGCATTGTGGTGTCGATGTACCTGCCGATTTTCAAG
TTGGGCCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.135

98.519

0.533
  pilG Neisseria gonorrhoeae MS11

51.134

98.025

0.501
  pilG Neisseria meningitidis 44/76-A

50.882

98.025

0.499
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Acinetobacter baumannii D1279779

49.118

98.025

0.481
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

37.931

100

0.38
  pilC Thermus thermophilus HB27

36.842

100

0.38