Detailed information NTG0869309

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RAN89_RS07345
• Genome accession: NZ_CP132507
• Coordinates: 1493451..1494296 (-)
• Length: 281 a.a.
• NCBI ID: WP_313868948.1
• Uniprot ID: -
• Organism: Rhodoferax mekongensis strain TBRC 17307
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1488451..1499296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RAN89_RS07315 (RAN89_07320)	argJ	1489218..1490444 (+)	1227	WP_313868942.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
RAN89_RS07320 (RAN89_07325)	-	1490456..1491331 (+)	876	WP_313868943.1	ATP-binding protein	-
RAN89_RS07325 (RAN89_07330)	-	1491328..1491831 (+)	504	WP_313868944.1	NUDIX domain-containing protein	-
RAN89_RS07330 (RAN89_07335)	-	1491833..1492030 (-)	198	WP_313868945.1	DNA gyrase inhibitor YacG	-
RAN89_RS07335 (RAN89_07340)	zapD	1492060..1492815 (-)	756	WP_313868946.1	cell division protein ZapD	-
RAN89_RS07340 (RAN89_07345)	coaE	1492838..1493446 (-)	609	WP_313868947.1	dephospho-CoA kinase	-
RAN89_RS07345 (RAN89_07350)	pilD	1493451..1494296 (-)	846	WP_313868948.1	A24 family peptidase	Machinery gene
RAN89_RS07350 (RAN89_07355)	pilC	1494296..1495513 (-)	1218	WP_313868949.1	type II secretion system F family protein	Machinery gene
RAN89_RS07355 (RAN89_07360)	pilB	1495532..1497265 (-)	1734	WP_313868950.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RAN89_RS07360 (RAN89_07365)	rfbC	1497372..1497920 (-)	549	WP_313868951.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
RAN89_RS07365 (RAN89_07370)	rfbA	1497920..1498807 (-)	888	WP_313869357.1	glucose-1-phosphate thymidylyltransferase RfbA	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 30896.71 Da
• Isoelectric Point: 7.5097

>NTDB_id=869309 RAN89_RS07345 WP_313868948.1 1493451..1494296(-) (pilD) [Rhodoferax mekongensis strain TBRC 17307]
MMTGVQWMDASLVGLLGLLIGSFLNVVIHRLPKMMERQWAVECAELSGIEAPETEKFNLVAPRSRCPHCGHWIRWYENVP
LFSYLALRGKCAECKKPISIRYPIVELVTGGLFFYCAWQWGPTPTGFAWCAFSACLLTLALIDWDTTLLPDDITLPLLWL
GLVAAALQWIPVGLSTALWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLFAALGAWFGWPVLIPMILMASVIGAVIGI
GMKFTSGLREGGYVPFGPFLAGAGFTALLLGPQNLRSLVNL

Nucleotide

• Length: 846 bp

>NTDB_id=869309 RAN89_RS07345 WP_313868948.1 1493451..1494296(-) (pilD) [Rhodoferax mekongensis strain TBRC 17307]
ATGATGACCGGTGTGCAATGGATGGACGCAAGTCTGGTCGGCCTTCTGGGGCTTTTGATCGGCAGCTTTTTGAACGTGGT
GATCCATCGCTTGCCCAAGATGATGGAACGCCAATGGGCCGTTGAATGTGCGGAGCTCTCCGGTATTGAGGCCCCTGAGA
CTGAAAAATTCAATCTAGTGGCACCACGATCGCGTTGCCCCCACTGTGGTCATTGGATAAGGTGGTATGAAAACGTTCCG
CTGTTCAGCTATCTGGCATTGCGCGGAAAATGCGCCGAATGCAAAAAACCAATCAGTATTCGCTATCCCATCGTTGAGTT
AGTAACCGGCGGTCTTTTCTTCTATTGTGCGTGGCAATGGGGCCCCACACCCACCGGGTTTGCTTGGTGCGCTTTCAGTG
CGTGCCTGCTGACTCTGGCATTGATAGATTGGGACACCACACTACTGCCCGATGACATTACCCTGCCACTGTTGTGGCTG
GGCTTGGTGGCGGCTGCATTGCAATGGATACCGGTGGGCCTGAGCACCGCTTTGTGGGGTGCCGTGGCAGGCTATTTGTC
CCTTTGGTCCGTTTATTGGCTGTTCAAGCTGGTCACGGGCAAAGAGGGTATGGGCTATGGTGACTTCAAGCTCTTTGCCG
CTCTAGGAGCGTGGTTCGGGTGGCCGGTTCTCATTCCTATGATTTTGATGGCCTCGGTCATCGGGGCGGTGATAGGTATT
GGCATGAAATTCACTTCCGGACTACGGGAAGGTGGATACGTACCCTTTGGCCCGTTCCTGGCGGGTGCAGGCTTTACCGC
CTTGTTGCTTGGCCCACAGAACCTGCGCAGCCTGGTAAACCTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (131-240)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.593	96.085	0.505
pilD	Vibrio campbellii strain DS40M4	48.905	97.509	0.477
pilD	Acinetobacter nosocomialis M2	48.881	95.374	0.466
pilD	Acinetobacter baumannii D1279779	48.507	95.374	0.463
pilD	Neisseria gonorrhoeae MS11	49.425	92.883	0.459