Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RAB71_RS16000 Genome accession   NZ_CP132343
Coordinates   3816713..3817972 (+) Length   419 a.a.
NCBI ID   WP_010342232.1    Uniprot ID   A0A2P5Z0V3
Organism   Xanthomonas sacchari strain CFBP4641     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3811713..3822972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB71_RS15985 (RAB71_15980) pilR 3812462..3813850 (+) 1389 WP_010342229.1 sigma-54 dependent transcriptional regulator Regulator
  RAB71_RS15990 (RAB71_15985) pilB 3814016..3815746 (-) 1731 WP_029561990.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RAB71_RS15995 (RAB71_15990) - 3815947..3816354 (-) 408 WP_010342231.1 pilin -
  RAB71_RS16000 (RAB71_15995) pilC 3816713..3817972 (+) 1260 WP_010342232.1 type II secretion system F family protein Machinery gene
  RAB71_RS16005 (RAB71_16000) - 3817979..3818842 (+) 864 WP_010342233.1 A24 family peptidase -
  RAB71_RS16010 (RAB71_16005) coaE 3818856..3819479 (+) 624 WP_010342234.1 dephospho-CoA kinase -
  RAB71_RS16015 (RAB71_16010) - 3819617..3820024 (-) 408 WP_010342235.1 RNA-binding S4 domain-containing protein -
  RAB71_RS16020 (RAB71_16015) - 3820541..3822001 (+) 1461 WP_010342236.1 MATE family efflux transporter -
  RAB71_RS16025 (RAB71_16020) rplS 3822260..3822676 (-) 417 WP_010342237.1 50S ribosomal protein L19 -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45632.92 Da        Isoelectric Point: 10.1706

>NTDB_id=868301 RAB71_RS16000 WP_010342232.1 3816713..3817972(+) (pilC) [Xanthomonas sacchari strain CFBP4641]
MSATRSAVKKEPVARSTSQQVPFVWEGTDKRGVKMKGEQVAKSANLLRAELRRQGITPSVVKPKPKPLFGASGSKIGTKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVSSILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLVALVGSIVGFTFAYKRSPAMQHGMDRLILKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYEK
SVLRMRDDVAVGYPVNMAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=868301 RAB71_RS16000 WP_010342232.1 3816713..3817972(+) (pilC) [Xanthomonas sacchari strain CFBP4641]
ATGTCCGCAACGCGCAGCGCAGTCAAGAAAGAGCCGGTCGCACGCAGCACCAGTCAGCAGGTGCCCTTCGTCTGGGAGGG
TACGGATAAGCGCGGCGTCAAAATGAAGGGTGAACAGGTCGCCAAGAGCGCCAACTTGCTGCGCGCCGAATTGCGCCGGC
AAGGCATCACGCCCTCGGTGGTCAAACCCAAGCCGAAACCGCTGTTCGGGGCGAGCGGCAGCAAGATCGGCACGAAGGAC
ATCGCTTTCTTCAGCCGCCAGATGGCGACGATGATGAAATCGGGCGTCCCCATCGTGGGTTCACTGGAAATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAAAAAATGGTCGACCAGATCCGTACCGATATTGAGGGCGGCTCGTCCCTATACGAAG
CCATCAGCAAGCACCCGGTGCAGTTCGATGAGTTGTACCGCAATCTGGTCAAGGCTGGCGAAGGTGCAGGTGTGCTCGAG
ACCGTGTTGGAGACGGTCGCGACCTACAAGGAAAACATCGAAGCACTGAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GGCCATGGTCATGGCCGTCGCCTTGATCGTCAGCTCGATCCTGCTGGTCTTCGTGGTTCCGCAGTTCGAAGACGTGTTCA
AGGGCTTCGGTGCGGAACTCCCAGCCTTCACCCAGATGATCGTGGCAGCCTCGCGCTTCATGGTGGCCTACTGGTGGTTG
TTGCTGGTTGCGCTGGTCGGATCTATCGTCGGCTTCACCTTTGCCTACAAGCGGTCGCCAGCCATGCAACACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGTTCAGTGGCGCGGTTCTCGCGCACCCTGGCGG
TCACCTTCCGCGCCGGCGTACCGTTGGTGGAGGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
TCGGTGCTGCGCATGCGCGACGACGTAGCGGTGGGCTACCCGGTCAACATGGCGATGAAGCAGACCAATCTGTTCCCGCA
CATGGTGATCCAGATGACGGCGATCGGCGAAGAGGCCGGCGCACTGGATGCCATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAAGAAGTGAACAACGCGGTAGATGCATTGAGCAGCTTGCTGGAGCCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P5Z0V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

53.283

94.511

0.504
  pilC Acinetobacter baumannii D1279779

51.471

97.375

0.501
  pilC Acinetobacter baylyi ADP1

50.245

97.375

0.489
  pilG Neisseria gonorrhoeae MS11

43.719

94.988

0.415
  pilC Vibrio cholerae strain A1552

42.963

96.659

0.415
  pilG Neisseria meningitidis 44/76-A

43.216

94.988

0.411
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379