Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RAB71_RS15985 Genome accession   NZ_CP132343
Coordinates   3812462..3813850 (+) Length   462 a.a.
NCBI ID   WP_010342229.1    Uniprot ID   A0A2P5Z0W4
Organism   Xanthomonas sacchari strain CFBP4641     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3807462..3818850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAB71_RS15970 (RAB71_15965) sucD 3808357..3809232 (-) 876 WP_010342226.1 succinate--CoA ligase subunit alpha -
  RAB71_RS15975 (RAB71_15970) sucC 3809255..3810424 (-) 1170 WP_010342227.1 ADP-forming succinate--CoA ligase subunit beta -
  RAB71_RS15980 (RAB71_15975) - 3810766..3812379 (+) 1614 WP_010342228.1 PAS domain-containing sensor histidine kinase -
  RAB71_RS15985 (RAB71_15980) pilR 3812462..3813850 (+) 1389 WP_010342229.1 sigma-54 dependent transcriptional regulator Regulator
  RAB71_RS15990 (RAB71_15985) pilB 3814016..3815746 (-) 1731 WP_029561990.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RAB71_RS15995 (RAB71_15990) - 3815947..3816354 (-) 408 WP_010342231.1 pilin -
  RAB71_RS16000 (RAB71_15995) pilC 3816713..3817972 (+) 1260 WP_010342232.1 type II secretion system F family protein Machinery gene
  RAB71_RS16005 (RAB71_16000) - 3817979..3818842 (+) 864 WP_010342233.1 A24 family peptidase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49875.26 Da        Isoelectric Point: 6.6703

>NTDB_id=868299 RAB71_RS15985 WP_010342229.1 3812462..3813850(+) (pilR) [Xanthomonas sacchari strain CFBP4641]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPPPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAASEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=868299 RAB71_RS15985 WP_010342229.1 3812462..3813850(+) (pilR) [Xanthomonas sacchari strain CFBP4641]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAACCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCAGGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACGAGAGCCGCGCCGCGCCGCCGCCGCCGG
CCCCGGAACAGGCCAGCCGCCTGCTGGGCGCCTCGGCGGCGATGGACGCGCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCGCGGCCGGTCCGTTCGTGCCGGTGAACTGCGGCGCGATCCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACGTTGTTCCTCGAC
GAGGTCGCCGAACTGCCGTTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CGCCAGCGAAGTGCCGGTGGACGTGCGGATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCGGCGCTGGA
CGCCCTGAGCAGCTACGCCTTTCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAAGCCGCCCCCGCC
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCGCAACTAGGCATCACCTTTCGAGCGCTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2P5Z0W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.554

100

0.626
  pilR Acinetobacter baumannii strain A118

46.868

100

0.47