Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   Q9G97_RS01620 Genome accession   NZ_CP132194
Coordinates   363691..364143 (+) Length   150 a.a.
NCBI ID   WP_305899469.1    Uniprot ID   -
Organism   Psychrobacter sp. M13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358691..369143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G97_RS01610 (Q9G97_01610) - 362249..362740 (+) 492 WP_371747918.1 type IV pilin protein -
  Q9G97_RS01615 (Q9G97_01615) - 362734..363237 (+) 504 WP_305899468.1 type IV pilin protein -
  Q9G97_RS01620 (Q9G97_01620) comP 363691..364143 (+) 453 WP_305899469.1 pilin Machinery gene
  Q9G97_RS01625 (Q9G97_01625) - 364210..365799 (+) 1590 WP_305899470.1 O-antigen ligase -
  Q9G97_RS01630 (Q9G97_01630) - 365924..366415 (+) 492 WP_305899471.1 pilin -
  Q9G97_RS01635 (Q9G97_01635) - 366761..368248 (+) 1488 WP_305899472.1 fused MFS/spermidine synthase -
  Q9G97_RS01640 (Q9G97_01640) fdxA 368530..368853 (-) 324 WP_305899473.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 15251.29 Da        Isoelectric Point: 4.4296

>NTDB_id=867539 Q9G97_RS01620 WP_305899469.1 363691..364143(+) (comP) [Psychrobacter sp. M13]
MNAQKGFTLIELMIVIAIIGILAAIAIPAYTDYTTRARVSEALTTASSMKATVSENIISNNKIIADGEEGAACTGVSTIT
ASSSAATKNVASSGCVNGVITVTTTEAAKEVPLTLTPEFGGGGVEWVCSTTADTNQKFVPSECRNVTAGG

Nucleotide


Download         Length: 453 bp        

>NTDB_id=867539 Q9G97_RS01620 WP_305899469.1 363691..364143(+) (comP) [Psychrobacter sp. M13]
ATGAATGCTCAAAAAGGTTTTACCCTAATCGAACTAATGATCGTTATCGCTATTATCGGTATCTTGGCGGCGATTGCTAT
CCCTGCGTACACTGACTATACGACTCGTGCTCGTGTCTCAGAAGCACTAACGACTGCGTCATCTATGAAAGCAACCGTAT
CAGAGAATATTATTAGTAACAATAAGATTATTGCTGACGGGGAGGAAGGTGCTGCTTGTACAGGAGTATCTACTATCACT
GCTAGTAGCTCAGCAGCAACTAAAAACGTTGCATCATCAGGTTGTGTAAACGGTGTAATTACAGTGACTACTACGGAAGC
TGCTAAAGAAGTACCATTGACTTTAACTCCTGAGTTTGGTGGTGGTGGTGTTGAATGGGTATGTAGTACTACTGCTGATA
CTAATCAAAAGTTTGTACCATCTGAGTGCCGTAACGTAACGGCAGGTGGCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

59.333

100

0.593
  pilA2 Legionella pneumophila str. Paris

53.846

95.333

0.513
  pilA2 Legionella pneumophila strain ERS1305867

53.147

95.333

0.507
  pilA Ralstonia pseudosolanacearum GMI1000

43.03

100

0.473
  pilE Neisseria gonorrhoeae strain FA1090

40.741

100

0.44
  pilE Neisseria gonorrhoeae MS11

38.889

100

0.42
  pilA Acinetobacter baumannii strain A118

38.562

100

0.393
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.621

96.667

0.373
  pilA Pseudomonas aeruginosa PAK

35.22

100

0.373