Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q9G97_RS00380 Genome accession   NZ_CP132194
Coordinates   86043..87266 (-) Length   407 a.a.
NCBI ID   WP_201570835.1    Uniprot ID   -
Organism   Psychrobacter sp. M13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 81043..92266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G97_RS00360 (Q9G97_00360) - 82962..83297 (+) 336 WP_201570831.1 pyrimidine/purine nucleoside phosphorylase -
  Q9G97_RS00365 (Q9G97_00365) rlmB 83491..84255 (+) 765 WP_201570832.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q9G97_RS00370 (Q9G97_00370) coaE 84224..84928 (-) 705 WP_305899273.1 dephospho-CoA kinase -
  Q9G97_RS00375 (Q9G97_00375) pilD 85136..86035 (-) 900 WP_305899274.1 A24 family peptidase Machinery gene
  Q9G97_RS00380 (Q9G97_00380) pilC 86043..87266 (-) 1224 WP_201570835.1 type II secretion system F family protein Machinery gene
  Q9G97_RS00385 (Q9G97_00385) pilB 87366..89075 (-) 1710 WP_305899275.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9G97_RS00390 (Q9G97_00390) tpiA 89402..90214 (+) 813 WP_305899276.1 triose-phosphate isomerase -
  Q9G97_RS00395 (Q9G97_00395) secG 90461..90769 (+) 309 WP_025652589.1 preprotein translocase subunit SecG -
  Q9G97_RS00410 (Q9G97_00410) rimP 91703..92218 (+) 516 WP_305899277.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44930.80 Da        Isoelectric Point: 9.8096

>NTDB_id=867537 Q9G97_RS00380 WP_201570835.1 86043..87266(-) (pilC) [Psychrobacter sp. M13]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRNLELAKATLRKQGITVKTIKKKPKALFEFKKSIKPIDIAIFSRQLATMM
KAGVPLTQSFEIVADSLDNPTMKELVLQIKADIESGSNFSSALRRHPRYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIRKAIKYPIAVIVVAVIVTMILLIKVVPVFSDLFESFGAELPAFTRMVVGMSEWMQSWWFILIIVIGGAIIGF
SEAKKRSKKFRDFLDRAVLKAPVFGKIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQIKNDVSTG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLLEPFIMAILGVLVGGLVIAMYLPIF
QLGNVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=867537 Q9G97_RS00380 WP_201570835.1 86043..87266(-) (pilC) [Psychrobacter sp. M13]
ATGGCAAAAGCTAAGACCGACATGCTGTTAGATTTTGTCTATGATGGGGTCAATCGGCGTGGACAAAAAGTCAAAGGCGA
AACGACCAGTCGCAATTTAGAGCTGGCAAAGGCGACCTTGCGCAAGCAGGGCATTACCGTCAAAACCATCAAGAAAAAGC
CTAAAGCGCTTTTTGAATTTAAAAAGTCTATCAAGCCTATCGATATTGCTATTTTTTCGCGCCAGCTGGCAACGATGATG
AAAGCCGGTGTTCCATTAACCCAATCTTTTGAGATCGTGGCGGACTCTCTAGATAATCCTACTATGAAAGAATTAGTACT
ACAGATCAAAGCAGATATTGAATCGGGAAGTAATTTTTCCTCAGCGCTACGTCGACATCCGCGTTACTTTGATGATCTAT
TCTGCTCGCTTGTTGAGTCGGGTGAGCAATCAGGGGCGCTTGAAACTATGCTTGAGCGGGTCGCCACTTACAAAGAAAAG
AGCGAGCTACTCAAAGCTAAGATTCGTAAAGCTATCAAATACCCAATAGCGGTAATAGTCGTTGCAGTCATTGTCACTAT
GATTCTATTGATAAAAGTAGTACCTGTATTCTCGGACCTTTTTGAATCCTTTGGTGCTGAATTACCCGCTTTTACTCGGA
TGGTAGTCGGTATGTCTGAGTGGATGCAATCTTGGTGGTTTATTTTAATCATTGTCATTGGCGGCGCTATTATTGGCTTT
TCTGAAGCGAAAAAACGCTCGAAAAAGTTTCGCGATTTTTTAGATCGAGCCGTTTTGAAAGCCCCTGTATTTGGTAAGAT
TGCTTACCAAGCAGTTATTGCTCGTTTTGCTCGTACTCTATCAACGACGTTCGCAGCAGGTGTTCCCTTGATTGATGCAC
TAGACTCTACCGCTGGGGCAACTAATAATGTGGTGTTTTATAATGCGACTCAACAGATTAAGAATGATGTTTCAACGGGT
CAGCAGCTACAGTTCTCTATGCGCTCAACCAATTTATTTCCTAGTATGGCAATTCAAATGGTAGGTATCGGTGAGGAATC
TGGTAGCTTAGAGGAGATGCTAGATAAAGTCGCGGTCTATTACGAAAATGAAGTCGACAACGCCGTTGATGGGCTAACGA
GTCTACTGGAACCTTTTATTATGGCTATTCTTGGCGTATTAGTAGGTGGTCTAGTCATTGCTATGTACTTACCTATTTTC
CAATTGGGTAATGTAGTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

69.608

100

0.698
  pilC Acinetobacter baylyi ADP1

68.382

100

0.686
  pilC Pseudomonas stutzeri DSM 10701

63.544

97.052

0.617
  pilC Legionella pneumophila strain ERS1305867

56.892

98.034

0.558
  pilG Neisseria gonorrhoeae MS11

44.697

97.297

0.435
  pilG Neisseria meningitidis 44/76-A

44.444

97.297

0.432
  pilC Vibrio cholerae strain A1552

42.892

100

0.43
  pilC Vibrio campbellii strain DS40M4

40

98.28

0.393