Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q9G97_RS00375 Genome accession   NZ_CP132194
Coordinates   85136..86035 (-) Length   299 a.a.
NCBI ID   WP_305899274.1    Uniprot ID   -
Organism   Psychrobacter sp. M13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 80136..91035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9G97_RS00355 (Q9G97_00355) recN 80681..82357 (-) 1677 WP_305900347.1 DNA repair protein RecN -
  Q9G97_RS00360 (Q9G97_00360) - 82962..83297 (+) 336 WP_201570831.1 pyrimidine/purine nucleoside phosphorylase -
  Q9G97_RS00365 (Q9G97_00365) rlmB 83491..84255 (+) 765 WP_201570832.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q9G97_RS00370 (Q9G97_00370) coaE 84224..84928 (-) 705 WP_305899273.1 dephospho-CoA kinase -
  Q9G97_RS00375 (Q9G97_00375) pilD 85136..86035 (-) 900 WP_305899274.1 A24 family peptidase Machinery gene
  Q9G97_RS00380 (Q9G97_00380) pilC 86043..87266 (-) 1224 WP_201570835.1 type II secretion system F family protein Machinery gene
  Q9G97_RS00385 (Q9G97_00385) pilB 87366..89075 (-) 1710 WP_305899275.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9G97_RS00390 (Q9G97_00390) tpiA 89402..90214 (+) 813 WP_305899276.1 triose-phosphate isomerase -
  Q9G97_RS00395 (Q9G97_00395) secG 90461..90769 (+) 309 WP_025652589.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33100.73 Da        Isoelectric Point: 8.2354

>NTDB_id=867536 Q9G97_RS00375 WP_305899274.1 85136..86035(-) (pilD) [Psychrobacter sp. M13]
MQLIELLQQNMTVALLVFALLGLCVGSFLNVVIHRIPLMMQFEWRQECSQFLVQQPETLEAQANDLATIIAKDTPITLSR
PASRCPNCAHKIKWYENIPLISWIGLRGRCSDCKASISWRYPLVELITALLSALVIYHFGVTMVGLSALILVWTLIALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQSWFVSPTQAIWGLLLGFLSLWIVVKVFYLLTKKHGMGQGDFKLLAVLGAWLGPM
MLPLIILLSSLLGSVVGIVLMRIHGASKPFAFGPYIAVAGIIALLYGNDIISWYLAMYI

Nucleotide


Download         Length: 900 bp        

>NTDB_id=867536 Q9G97_RS00375 WP_305899274.1 85136..86035(-) (pilD) [Psychrobacter sp. M13]
ATGCAATTAATAGAATTATTACAACAAAACATGACTGTAGCCCTGCTCGTATTTGCACTATTAGGGCTTTGTGTGGGCAG
CTTTTTAAATGTCGTTATTCATCGCATACCGTTGATGATGCAGTTTGAATGGCGACAGGAGTGCAGTCAATTTTTGGTAC
AGCAGCCTGAGACATTAGAAGCTCAAGCGAATGATCTCGCAACTATCATTGCTAAAGACACCCCTATTACTTTAAGCCGT
CCAGCGTCGCGTTGTCCCAACTGTGCTCATAAAATCAAGTGGTATGAGAATATACCCCTTATCAGCTGGATAGGTTTACG
CGGACGTTGCTCGGACTGCAAGGCTTCTATCAGTTGGCGCTATCCGCTCGTTGAGCTGATTACCGCTCTGCTCTCAGCAT
TGGTTATTTATCACTTTGGCGTCACCATGGTAGGTCTTTCAGCATTGATATTAGTATGGACGCTGATAGCGCTAACAGGT
ATTGATTTTGATACTCAGCTACTACCAGATCGCCTAACTTTCCCGTTGGCGGGGTTGGGACTCGCGGTTAATTCGCAAAG
CTGGTTTGTCAGTCCGACGCAAGCTATTTGGGGCTTGCTACTAGGGTTTTTATCTTTATGGATCGTAGTGAAAGTGTTTT
ATTTACTGACGAAAAAGCACGGTATGGGGCAAGGTGATTTTAAATTACTAGCGGTATTAGGCGCTTGGCTTGGGCCAATG
ATGCTACCTCTTATTATCTTATTATCTTCGCTATTAGGTTCTGTCGTTGGCATTGTTTTGATGAGAATACATGGCGCAAG
CAAACCTTTTGCCTTTGGGCCTTATATTGCAGTTGCGGGGATTATTGCTTTACTATACGGTAATGATATCATTAGCTGGT
ATTTGGCTATGTATATTTAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-139)

Type IV leader peptidase family (Peptidase_A24)

(149-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

53.716

98.997

0.532
  pilD Acinetobacter baumannii D1279779

52.203

98.662

0.515
  pilD Vibrio cholerae strain A1552

48.592

94.983

0.462
  pilD Vibrio campbellii strain DS40M4

46.69

95.987

0.448
  pilD Neisseria gonorrhoeae MS11

43.929

93.645

0.411