Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q9L40_RS13995 Genome accession   NZ_CP132190
Coordinates   1901088..1902314 (-) Length   408 a.a.
NCBI ID   WP_305798925.1    Uniprot ID   -
Organism   Vibrio cholerae strain DRC187     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896088..1907314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS13970 (Q9L40_13970) parC 1896089..1898374 (+) 2286 WP_113620435.1 DNA topoisomerase IV subunit A -
  Q9L40_RS13975 (Q9L40_13975) yacG 1898423..1898620 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  Q9L40_RS13980 (Q9L40_13980) zapD 1898778..1899518 (-) 741 WP_000207203.1 cell division protein ZapD -
  Q9L40_RS13985 (Q9L40_13985) coaE 1899550..1900158 (-) 609 WP_162891880.1 dephospho-CoA kinase -
  Q9L40_RS13990 (Q9L40_13990) pilD 1900155..1901030 (-) 876 WP_000418747.1 A24 family peptidase Machinery gene
  Q9L40_RS13995 (Q9L40_13995) pilC 1901088..1902314 (-) 1227 WP_305798925.1 type II secretion system F family protein Machinery gene
  Q9L40_RS14000 (Q9L40_14000) pilB 1902357..1904045 (-) 1689 WP_044127953.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9L40_RS14005 (Q9L40_14005) - 1904052..1904480 (-) 429 WP_305798924.1 pilin -
  Q9L40_RS14010 (Q9L40_14010) nadC 1904725..1905615 (-) 891 WP_305798923.1 carboxylating nicotinate-nucleotide diphosphorylase -
  Q9L40_RS14015 (Q9L40_14015) ampD 1905913..1906458 (+) 546 WP_088128396.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45127.44 Da        Isoelectric Point: 10.3424

>NTDB_id=867523 Q9L40_RS13995 WP_305798925.1 1901088..1902314(-) (pilC) [Vibrio cholerae strain DRC187]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDHHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=867523 Q9L40_RS13995 WP_305798925.1 1901088..1902314(-) (pilC) [Vibrio cholerae strain DRC187]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTCTCTTTATTGGCGCGCCTAACCCATCGCGTGAAAGGCAAAGACATCACGATTTTGACTCGGCAGTTGGCGACCATG
CTCACCACGGGCGTACCGATTGTGCAAGCCCTCAAGTTGGTGGGCGATCATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACGCCACTTTCCAAGGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGATTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAAGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAGCAACTACGCGCCAAGGTGATTAAAGCGCTCATCTACCCGAGTATGGTGGTATTGGTCGCGCTCGGAGTTTC
CTACTTAATGCTCACCATGGTCATCCCAGAATTTGAAAGCATGTTTAAAGGCTTTGGTGCTGAACTGCCTTGGTTTACGC
AGCAAGTGCTGAAACTCTCACACTGGGTGCAGGCTTACAGTTTATGGGCATTTATCGCCATCGCAGCAGCCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCTTTCCAGATCCGTTTAAAAACCAGCCGCTTAGGGCTGAAATTTCCGATTATTGGTAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATACCGATCCTCGCCA
GTTTAAAAACCACCGCCAAAACCTCCGGCAATGTGCACTTTGAAACCGCGATTAATGAGGTGTACCGCGATACCGCTGCG
GGTATGCCGATGTATATTGCGATGCGTAATACCGAAGCTTTTCCGGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGGCAATTAGATGACATGCTCAACAAGGTCGCGACCATCTATGAATTTGAAGTCGATAACACGGTCGATAACTTGG
GCAAGATTCTTGAACCACTGATCATCGTGTTTCTTGGGACGGTCGTGGGCGGCTTAGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.51

100

0.995
  pilC Vibrio campbellii strain DS40M4

73.75

98.039

0.723
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

42.015

99.755

0.419
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.172

97.059

0.409
  pilG Neisseria gonorrhoeae MS11

41.294

98.529

0.407
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402