Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q9L40_RS13990 Genome accession   NZ_CP132190
Coordinates   1900155..1901030 (-) Length   291 a.a.
NCBI ID   WP_000418747.1    Uniprot ID   H9L4S3
Organism   Vibrio cholerae strain DRC187     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1895155..1906030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L40_RS13970 (Q9L40_13970) parC 1896089..1898374 (+) 2286 WP_113620435.1 DNA topoisomerase IV subunit A -
  Q9L40_RS13975 (Q9L40_13975) yacG 1898423..1898620 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  Q9L40_RS13980 (Q9L40_13980) zapD 1898778..1899518 (-) 741 WP_000207203.1 cell division protein ZapD -
  Q9L40_RS13985 (Q9L40_13985) coaE 1899550..1900158 (-) 609 WP_162891880.1 dephospho-CoA kinase -
  Q9L40_RS13990 (Q9L40_13990) pilD 1900155..1901030 (-) 876 WP_000418747.1 A24 family peptidase Machinery gene
  Q9L40_RS13995 (Q9L40_13995) pilC 1901088..1902314 (-) 1227 WP_305798925.1 type II secretion system F family protein Machinery gene
  Q9L40_RS14000 (Q9L40_14000) pilB 1902357..1904045 (-) 1689 WP_044127953.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9L40_RS14005 (Q9L40_14005) - 1904052..1904480 (-) 429 WP_305798924.1 pilin -
  Q9L40_RS14010 (Q9L40_14010) nadC 1904725..1905615 (-) 891 WP_305798923.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32433.69 Da        Isoelectric Point: 7.1618

>NTDB_id=867522 Q9L40_RS13990 WP_000418747.1 1900155..1901030(-) (pilD) [Vibrio cholerae strain DRC187]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=867522 Q9L40_RS13990 WP_000418747.1 1900155..1901030(-) (pilD) [Vibrio cholerae strain DRC187]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGCAGTTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATTCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTAATTGCCACTCATTTTCCATTCGGTGTATTTGCCGTGGCGCTGC
TGTTTTTCAGCTATGTGTTGATTGCGGCAACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCGCTTGCACTGCTTGGCTTTTCTCCGGTTTCACTCAGTGATGCGGTGATCGGAGCCATGGC
GGGCTATCTCTCACTGTGGTCGATTTACTGGCTATTTAAACTGCTGACAGGTAAAGAAGGCATGGGGTATGGCGATTTCA
AATTGCTCGCTGCTCTCGGCGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTGCTGCTCTCATCAGTGGTCGGGGTG
ATTTTCGGTTTAATCCAACTACGCCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H9L4S3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

100

100

1
  pilD Vibrio campbellii strain DS40M4

75.347

98.969

0.746
  pilD Acinetobacter nosocomialis M2

53.676

93.471

0.502
  pilD Acinetobacter baumannii D1279779

53.309

93.471

0.498
  pilD Neisseria gonorrhoeae MS11

44.792

98.969

0.443