Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5632_RS02275 Genome accession   NZ_AP024615
Coordinates   485630..486898 (-) Length   422 a.a.
NCBI ID   WP_146509491.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17383     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 480630..491898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5632_RS02250 (TUM17383_04280) mutT 482641..483039 (-) 399 WP_221055728.1 8-oxo-dGTP diphosphatase MutT -
  K5632_RS02255 (TUM17383_04290) yacG 483039..483251 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  K5632_RS02260 (TUM17383_04300) zapD 483296..484036 (-) 741 WP_028779562.1 cell division protein ZapD -
  K5632_RS02265 (TUM17383_04310) coaE 484033..484644 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  K5632_RS02270 (TUM17383_04320) pilD 484645..485559 (-) 915 WP_221055729.1 A24 family peptidase Machinery gene
  K5632_RS02275 pilC 485630..486898 (-) 1269 WP_146509491.1 type II secretion system F family protein Machinery gene
  K5632_RS02280 (TUM17383_04340) pilB 487056..488762 (-) 1707 WP_115389372.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5632_RS02285 (TUM17383_04350) - 488826..489257 (-) 432 WP_221055730.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K5632_RS02290 (TUM17383_04360) nadC 490128..490988 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K5632_RS02295 (TUM17383_04370) ampD 491147..491725 (+) 579 WP_221055731.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45924.18 Da        Isoelectric Point: 10.2391

>NTDB_id=86598 K5632_RS02275 WP_146509491.1 485630..486898(-) (pilC) [Shewanella algae strain TUM17383]
MATATATAKDNKTKNKGAKPQPKIHTFTWKGVNRDGKQSSGELRGANITEIKTLLKSQGINPKLVRKKSASLFGGDKKIK
PMDIAVITRQISTMLAAGVPLVTSIELIARGHEKNKVRVLLGTVLADVQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSG
SLDAVFDRIATYKEKAEALKSKIKKAMFYPAAVVVVAISVTALLLLFVVPQFEDIFKSFGAELPAFTQMIIGISRALQST
WYIFVVVIVTSIWLFIRAHRSSEAFRNRLDELVLKTPLIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPIMMVVIG
TLVGGLIVGMYLPIFQLGKVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=86598 K5632_RS02275 WP_146509491.1 485630..486898(-) (pilC) [Shewanella algae strain TUM17383]
ATGGCAACTGCAACGGCGACAGCAAAAGATAACAAGACCAAAAATAAAGGCGCCAAGCCCCAGCCCAAGATCCATACCTT
TACTTGGAAGGGAGTCAATCGCGACGGTAAGCAAAGCTCTGGTGAATTGCGTGGAGCCAACATTACCGAAATAAAGACAC
TTCTCAAAAGCCAGGGGATCAATCCTAAACTGGTTCGCAAGAAATCTGCTTCGCTTTTCGGTGGCGATAAAAAAATCAAG
CCGATGGATATTGCGGTAATCACCCGCCAAATATCAACTATGCTGGCTGCCGGCGTACCACTGGTTACTTCCATCGAATT
GATCGCTCGCGGCCATGAGAAAAACAAGGTACGAGTCCTTCTAGGCACTGTGTTGGCCGATGTCCAGGCAGGTATTCCGC
TCTCCGATGCACTTCGTCCACACAGAGTCTATTTCGATGACCTTTATGTCGATTTGGTCGCTGCCGGTGAGCACTCAGGT
TCTTTGGATGCAGTATTCGACCGTATCGCCACTTACAAGGAAAAAGCCGAAGCCCTAAAATCCAAAATCAAGAAAGCCAT
GTTCTACCCAGCGGCTGTGGTAGTTGTTGCAATATCAGTTACAGCACTCTTACTCCTTTTTGTTGTTCCACAGTTTGAAG
ACATTTTTAAGAGCTTTGGAGCAGAGCTCCCTGCTTTTACTCAAATGATAATAGGTATTAGCAGAGCGCTTCAAAGTACT
TGGTATATATTTGTTGTAGTTATAGTAACGAGTATTTGGTTGTTCATTAGGGCTCATAGAAGCTCTGAAGCCTTTCGAAA
TAGACTTGATGAGTTAGTACTAAAAACGCCTCTAATTGGAGAAATACTCCACAAAGGAGCAATGGCTCGTTTCGCCCGCA
CTCTGGCCACCACCTTTGCCGCCGGGGTGCCACTGATTGATGGCCTGGAGTCTGCCGCAGGCGCCTCCGGCAACTATGTC
TACCGCAAGGCACTGTTGAATGTGCGTACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAACT
TTTTCCCGACATGCTGATCCAGATGGTGATGATAGGTGAAGAGTCCGGCTCATTGGATAACATGCTCAACAAGATTGCCA
ATATCTACGAGATGCAGGTGGATGATGCCGTAGATGGCCTTTCCAGCCTGATAGAACCTATTATGATGGTAGTTATCGGC
ACCCTGGTAGGCGGGCTTATCGTCGGCATGTACCTACCTATCTTCCAGTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.391

94.55

0.533
  pilC Acinetobacter baylyi ADP1

50.614

96.445

0.488
  pilC Legionella pneumophila strain ERS1305867

48.762

95.735

0.467
  pilC Acinetobacter baumannii D1279779

49.497

94.313

0.467
  pilC Vibrio cholerae strain A1552

45.137

95.024

0.429
  pilC Vibrio campbellii strain DS40M4

44.554

95.735

0.427
  pilG Neisseria meningitidis 44/76-A

43.081

90.758

0.391
  pilG Neisseria gonorrhoeae MS11

43.081

90.758

0.391

Multiple sequence alignment