Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5638_RS02280 Genome accession   NZ_AP024614
Coordinates   483335..484603 (-) Length   422 a.a.
NCBI ID   WP_221060510.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478335..489603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5638_RS22525 (TUM17382_04290) - 480000..480272 (-) 273 Protein_418 transposase -
  K5638_RS02255 (TUM17382_04300) mutT 480346..480744 (-) 399 WP_144128772.1 8-oxo-dGTP diphosphatase MutT -
  K5638_RS02260 (TUM17382_04310) yacG 480744..480956 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  K5638_RS02265 (TUM17382_04320) zapD 481001..481741 (-) 741 WP_028779562.1 cell division protein ZapD -
  K5638_RS02270 (TUM17382_04330) coaE 481738..482349 (-) 612 WP_144133415.1 dephospho-CoA kinase -
  K5638_RS02275 (TUM17382_04340) pilD 482350..483264 (-) 915 WP_221060509.1 A24 family peptidase Machinery gene
  K5638_RS02280 (TUM17382_04350) pilC 483335..484603 (-) 1269 WP_221060510.1 type II secretion system F family protein Machinery gene
  K5638_RS02285 (TUM17382_04360) pilB 484759..486465 (-) 1707 WP_221060511.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5638_RS02290 (TUM17382_04370) pilA/pilAI 486484..486918 (-) 435 WP_144128766.1 pilin Machinery gene
  K5638_RS02295 (TUM17382_04390) nadC 487786..488646 (-) 861 WP_221060512.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K5638_RS02300 (TUM17382_04400) ampD 488805..489383 (+) 579 WP_221060513.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45817.07 Da        Isoelectric Point: 10.3148

>NTDB_id=86572 K5638_RS02280 WP_221060510.1 483335..484603(-) (pilC) [Shewanella algae strain TUM17382]
MVTATATAKNNKAKNKGAKAQPKIHTFTWKGQNRDGKLSSGELRGASIGEIKTLLKSQGINPKTVRKKSASLFGGDKKIK
PMDIAVITRQIATMLAAGVPLVTSIELIARGHEKNKVRVLLGTVLADIQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTVLLLLFVVPQFESIFAGFGAELPAFTQMIVNISRGLQST
WYLFLAAIVISVWLFVRAHRNSEHFRNRIDEMVLKIPLIGEILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNFV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAVDGLSSLIEPVMMVVIG
TLVGGLIVGMYLPIFQMGNVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=86572 K5638_RS02280 WP_221060510.1 483335..484603(-) (pilC) [Shewanella algae strain TUM17382]
ATGGTAACCGCGACGGCGACAGCAAAAAACAATAAAGCCAAAAATAAAGGCGCCAAAGCCCAACCTAAGATCCATACCTT
TACTTGGAAAGGACAAAATCGTGACGGCAAACTCAGCTCCGGTGAGCTGCGTGGTGCAAGCATAGGCGAAATTAAGACCT
TACTAAAAAGTCAGGGGATTAATCCCAAGACGGTACGTAAAAAATCCGCTTCGCTTTTCGGTGGTGATAAAAAAATCAAG
CCGATGGATATCGCAGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCCGGCGTACCGCTGGTCACATCAATCGAACT
AATCGCTCGCGGCCATGAAAAAAACAAGGTGCGGGTGCTGCTTGGCACTGTATTGGCCGATATCCAGGCCGGTATCCCGC
TGTCCGATGCCCTCCGCCCGCACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGCGAACATTCAGGC
TCTTTGGACGCCGTATTCGACCGTATCGCCACATATCGGGAAAAAGCTGAAGCCCTCAAGTCAAAAATTAAAAAGGCTAT
GTTCTACCCTGCCGCAGTAGTGGTGGTTGCTATAGCCGTTACTGTGCTGTTGCTTTTATTTGTAGTACCTCAATTCGAAA
GCATATTTGCTGGTTTTGGCGCCGAACTGCCCGCCTTTACCCAAATGATCGTCAATATCAGCCGCGGCCTTCAGAGTACC
TGGTATCTATTTCTAGCAGCCATAGTTATCAGTGTTTGGCTGTTTGTACGCGCTCACCGCAACTCTGAGCACTTCCGTAA
CCGTATCGACGAAATGGTGCTGAAGATCCCACTTATTGGTGAAATTCTCCATAAAGGTGCCATGGCCCGTTTTGCCCGCA
CTCTGGCCACCACTTTTGCCGCCGGGGTGCCACTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGTAATTTTGTT
TACCGCAAGGCGCTGTTGAATGTGCGCACCGAAGTGATGGCCGGAATGCAGATGAACGTGGCCATGCGCACCACCAAGCT
TTTCCCCGATATGCTGATCCAGATGGTGATGATAGGTGAAGAGTCCGGCTCATTGGACAACATGCTCAACAAGATTGCCA
ATATCTACGAGATGCAGGTGGATGATGCCGTAGATGGCCTTTCCAGCCTAATAGAACCAGTCATGATGGTAGTTATCGGC
ACTCTGGTTGGTGGCCTTATCGTCGGCATGTACCTACCTATCTTCCAGATGGGTAACGTGGTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.89

94.55

0.528
  pilC Acinetobacter baylyi ADP1

49.14

96.445

0.474
  pilC Legionella pneumophila strain ERS1305867

49.01

95.735

0.469
  pilC Acinetobacter baumannii D1279779

48.039

96.682

0.464
  pilC Vibrio cholerae strain A1552

45.885

95.024

0.436
  pilC Vibrio campbellii strain DS40M4

44.665

95.498

0.427
  pilG Neisseria meningitidis 44/76-A

41.687

98.341

0.41
  pilG Neisseria gonorrhoeae MS11

41.687

98.341

0.41

Multiple sequence alignment