Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q7572_RS01780 Genome accession   NZ_CP131878
Coordinates   387500..387934 (+) Length   144 a.a.
NCBI ID   WP_004884710.1    Uniprot ID   A0AB36M203
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 386473..387295 387500..387934 flank 205


Gene organization within MGE regions


Location: 386473..387934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS01775 (Q7572_01785) - 386473..387295 (+) 823 WP_076611894.1 IS5-like element ISAba27 family transposase -
  Q7572_RS01780 (Q7572_01790) pilA 387500..387934 (+) 435 WP_004884710.1 pilin Machinery gene

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14736.79 Da        Isoelectric Point: 7.5909

>NTDB_id=865705 Q7572_RS01780 WP_004884710.1 387500..387934(+) (pilA) [Acinetobacter nosocomialis strain 2014S01-097]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTTALTDVTALGLQQSTNAC
AVTASIGTDGTSNITCTLKGTSQINGKKIQWVRAADNATNGTTGTWSCITDVADNLRPKSCGAS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=865705 Q7572_RS01780 WP_004884710.1 387500..387934(+) (pilA) [Acinetobacter nosocomialis strain 2014S01-097]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTTATGATCGTGGTTGCGATTATTGGTATTTTGGCAGCGATCGCGAT
TCCTGCTTATCAAAACTATATTGCTAAGTCGCAAGTAAGTACTGGTTTAGCAGATATTACTGCTGGAAAAACAAACGCAG
AAACAAAATTGGCTGAAGGATTAACTACTGCATTAACTGATGTAACTGCTTTAGGCTTACAACAATCTACGAATGCTTGT
GCTGTTACAGCGAGTATTGGTACTGATGGTACCAGTAACATTACATGTACTTTGAAAGGAACATCTCAAATTAATGGGAA
AAAAATTCAGTGGGTACGTGCTGCAGATAATGCAACAAATGGTACAACTGGAACTTGGAGTTGTATAACAGATGTAGCTG
ATAACTTACGTCCTAAATCATGTGGCGCATCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

52.027

100

0.535
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

45.333

100

0.472
  pilA Vibrio cholerae strain A1552

45.333

100

0.472
  pilA Vibrio cholerae C6706

45.333

100

0.472
  pilA Pseudomonas aeruginosa PAK

43.506

100

0.465
  pilA/pilAI Pseudomonas stutzeri DSM 10701

46.479

98.611

0.458
  comP Acinetobacter baylyi ADP1

41.722

100

0.438
  pilA/pilAII Pseudomonas stutzeri DSM 10701

44.681

97.917

0.438
  pilA Vibrio parahaemolyticus RIMD 2210633

43.651

87.5

0.382