Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5628_RS02285 Genome accession   NZ_AP024613
Coordinates   478732..479997 (-) Length   421 a.a.
NCBI ID   WP_208146121.1    Uniprot ID   A0AAD1K8H4
Organism   Shewanella algae strain TUM17379     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473732..484997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5628_RS02255 - 475405..475674 (-) 270 Protein_423 transposase -
  K5628_RS02260 (TUM17379_04200) mutT 475745..476143 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  K5628_RS02265 (TUM17379_04210) yacG 476143..476355 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  K5628_RS02270 (TUM17379_04220) zapD 476400..477140 (-) 741 WP_028779562.1 cell division protein ZapD -
  K5628_RS02275 (TUM17379_04230) coaE 477137..477748 (-) 612 WP_208146119.1 dephospho-CoA kinase -
  K5628_RS02280 (TUM17379_04240) pilD 477749..478663 (-) 915 WP_208146120.1 A24 family peptidase Machinery gene
  K5628_RS02285 (TUM17379_04250) pilC 478732..479997 (-) 1266 WP_208146121.1 type II secretion system F family protein Machinery gene
  K5628_RS02290 (TUM17379_04260) pilB 480150..481856 (-) 1707 WP_208146123.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5628_RS02295 (TUM17379_04270) - 481866..482279 (-) 414 WP_025012053.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K5628_RS02300 (TUM17379_04280) nadC 483147..484007 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K5628_RS02305 (TUM17379_04290) ampD 484166..484744 (+) 579 WP_208146125.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45693.81 Da        Isoelectric Point: 10.3084

>NTDB_id=86548 K5628_RS02285 WP_208146121.1 478732..479997(-) (pilC) [Shewanella algae strain TUM17379]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGNNRDGKLSSGELRGTSITEVKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTTIELIARGHEKNKVRVLLGTVLADIQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLVAVVPQFEEIFKGFGAELPAFTQLIVNISRGLQSTW
YLFLAGIVISVWLFVRAHRNSENFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=86548 K5628_RS02285 WP_208146121.1 478732..479997(-) (pilC) [Shewanella algae strain TUM17379]
ATGGCAACCGCAACGGCGACAGCAAAAAACAATAAAGCCAAGAATAAAGGCGCCAAAGCCCAACCCAAGATCCACACCTT
TACCTGGAAGGGGAATAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGCATCACCGAAGTAAAAACCC
TTCTTAAAAGCCAGGGGATTAATCCCAAGACGGTACGTAAAAAATCAGCGTCTATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCCGGGGTTCCCTTGGTAACAACTATTGAATTGAT
CGCCCGCGGCCATGAAAAAAACAAGGTGCGGGTACTACTCGGCACTGTATTGGCCGATATCCAAGCCGGCATCCCGCTGT
CCGATGCTCTTCGCCCCCATAGAGCATACTTCGATGATCTCTACGTCGACTTAGTGGCCGCCGGTGAACATTCAGGTTCC
TTGGATGCCGTATTTGATCGTATCGCCACCTACAGGGAAAAGTCAGAGGCCCTTAAGTCGAAAATTAAGAAAGCCATGTT
TTACCCTGCTGCAGTGGTGGTAGTTGCCATAGCCGTTACCGTGCTGCTGCTTGTTGCCGTTGTACCTCAATTTGAAGAAA
TATTTAAAGGCTTCGGCGCCGAACTGCCTGCCTTTACCCAATTAATTGTCAATATCAGCCGCGGCCTTCAGAGTACCTGG
TATCTATTTCTGGCTGGTATCGTTATCAGTGTCTGGCTCTTTGTCCGTGCTCATCGAAATTCAGAAAATTTCCGTAACCG
TATCGACGAAATGGTGCTTAAGATCCCCGCGATAGGAGATATCTTACATAAAGGTGCCATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCTGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGTAATTATGTTTAC
CGCAAGGCGCTATTAAATGTGCGTACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCTATT
CCCCGATATGCTAATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAATATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGACGGACTCTCCAGCTTGATAGAACCTATTATGATGGTAGTTATCGGCACC
ATAGTCGGCGGGCTTATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.138

94.774

0.523
  pilC Acinetobacter baylyi ADP1

49.386

96.675

0.477
  pilC Legionella pneumophila strain ERS1305867

49.01

95.962

0.47
  pilC Acinetobacter baumannii D1279779

47.304

96.912

0.458
  pilC Vibrio cholerae strain A1552

47.132

95.249

0.449
  pilC Vibrio campbellii strain DS40M4

45.161

95.724

0.432
  pilG Neisseria meningitidis 44/76-A

42.029

98.337

0.413
  pilG Neisseria gonorrhoeae MS11

42.029

98.337

0.413

Multiple sequence alignment