Detailed information NTG0086547

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K5628_RS02280
• Genome accession: NZ_AP024613
• Coordinates: 477749..478663 (-)
• Length: 304 a.a.
• NCBI ID: WP_208146120.1
• Uniprot ID: A0AAD1K7J6
• Organism: Shewanella algae strain TUM17379
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 472749..483663

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5628_RS02255	-	475405..475674 (-)	270	Protein_423	transposase	-
K5628_RS02260 (TUM17379_04200)	mutT	475745..476143 (-)	399	WP_025012058.1	8-oxo-dGTP diphosphatase MutT	-
K5628_RS02265 (TUM17379_04210)	yacG	476143..476355 (-)	213	WP_025886789.1	DNA gyrase inhibitor YacG	-
K5628_RS02270 (TUM17379_04220)	zapD	476400..477140 (-)	741	WP_028779562.1	cell division protein ZapD	-
K5628_RS02275 (TUM17379_04230)	coaE	477137..477748 (-)	612	WP_208146119.1	dephospho-CoA kinase	-
K5628_RS02280 (TUM17379_04240)	pilD	477749..478663 (-)	915	WP_208146120.1	A24 family peptidase	Machinery gene
K5628_RS02285 (TUM17379_04250)	pilC	478732..479997 (-)	1266	WP_208146121.1	type II secretion system F family protein	Machinery gene
K5628_RS02290 (TUM17379_04260)	pilB	480150..481856 (-)	1707	WP_208146123.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K5628_RS02295 (TUM17379_04270)	-	481866..482279 (-)	414	WP_025012053.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33899.31 Da
• Isoelectric Point: 7.2147

>NTDB_id=86547 K5628_RS02280 WP_208146120.1 477749..478663(-) (pilD) [Shewanella algae strain TUM17379]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLLLPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWLVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILFSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide

• Length: 915 bp

>NTDB_id=86547 K5628_RS02280 WP_208146120.1 477749..478663(-) (pilD) [Shewanella algae strain TUM17379]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCTGTAATAGG
CAGCTTTCTCAATGTGGTAATCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTGGGTGAAGCCAAGCTTAATGCACCAATAGATAACTATCCGGCCAAATAC
AATCTGTTACTGCCGAAATCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCGATATTTGAGCTGCTGACCGCCC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATCTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCGGGCACCTTTACTAATTTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATCTAAGTCTCTGGTTGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAACTGATGGCACTGTTTGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGTTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGGC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	48.505	99.013	0.48
pilD	Vibrio cholerae strain A1552	49.315	96.053	0.474
pilD	Acinetobacter nosocomialis M2	47.682	99.342	0.474
pilD	Acinetobacter baumannii D1279779	47.351	99.342	0.47
pilD	Neisseria gonorrhoeae MS11	45.552	92.434	0.421