Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5624_RS02240 Genome accession   NZ_AP024612
Coordinates   475538..476803 (-) Length   421 a.a.
NCBI ID   WP_144224958.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17378     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470538..481803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5624_RS02210 - 472269..472469 (-) 201 Protein_407 transposase -
  K5624_RS02215 (TUM17378_04170) mutT 472544..472942 (-) 399 WP_144379648.1 8-oxo-dGTP diphosphatase MutT -
  K5624_RS02220 (TUM17378_04180) yacG 472942..473154 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  K5624_RS02225 (TUM17378_04190) zapD 473199..473939 (-) 741 WP_028779562.1 cell division protein ZapD -
  K5624_RS02230 (TUM17378_04200) coaE 473936..474547 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  K5624_RS02235 (TUM17378_04210) pilD 474548..475462 (-) 915 WP_144224959.1 A24 family peptidase Machinery gene
  K5624_RS02240 (TUM17378_04220) pilC 475538..476803 (-) 1266 WP_144224958.1 type II secretion system F family protein Machinery gene
  K5624_RS02245 (TUM17378_04230) pilB 476959..478665 (-) 1707 WP_144224957.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5624_RS02250 (TUM17378_04240) - 478675..479088 (-) 414 WP_144224956.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K5624_RS02255 (TUM17378_04250) nadC 479946..480806 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K5624_RS02260 (TUM17378_04260) ampD 480965..481543 (+) 579 WP_144216886.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45781.88 Da        Isoelectric Point: 10.2778

>NTDB_id=86524 K5624_RS02240 WP_144224958.1 475538..476803(-) (pilC) [Shewanella algae strain TUM17378]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGHNRDGKLSSGELRGTSITEIKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTSIELIARGHEKNRVRVLLGTVLADLQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLVAVVPQFEEIFNGFGAELPAFTQLIVNISRGLQSTW
YLFLAGIVISVWLFVRAHRNSEHFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=86524 K5624_RS02240 WP_144224958.1 475538..476803(-) (pilC) [Shewanella algae strain TUM17378]
ATGGCAACTGCAACGGCGACAGCTAAAAACAATAAAGCCAAAAATAAAGGCGCCAAGGCCCAACCCAAGATCCATACCTT
TACCTGGAAGGGGCATAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGTACCAGCATTACTGAGATAAAAACCC
TGCTTAAGAGCCAGGGGATTAATCCCAAGACGGTACGTAAAAAATCAGCTTCCATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATCACCCGTCAGATAGCCACTATGCTGGCTGCGGGTGTCCCCTTGGTAACCTCTATTGAATTGAT
CGCCCGCGGCCATGAGAAAAACAGAGTGCGGGTGCTGCTTGGCACTGTATTGGCCGATCTCCAGGCCGGTATTCCACTCT
CCGATGCCCTCCGCCCACACAGAGTCTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGTGAACATTCAGGTTCC
TTGGATGCCGTATTTGATCGTATCGCCACCTATAGGGAAAAGTCAGAGGCCCTTAAGTCGAAAATCAAGAAAGCCATGTT
TTACCCTGCTGCAGTGGTGGTAGTTGCCATAGCCGTTACCGTGCTGCTGCTTGTTGCCGTTGTACCTCAATTTGAAGAAA
TCTTTAACGGATTTGGCGCCGAACTGCCTGCCTTTACCCAATTAATTGTCAATATCAGCCGCGGCCTTCAGAGTACCTGG
TATCTATTTCTAGCTGGTATCGTTATCAGTGTCTGGCTCTTTGTCCGTGCTCACCGCAACTCTGAGCACTTCCGTAACCG
TATCGACGAAATGGTGCTTAAGATCCCCGCGATAGGAGATATCTTACATAAAGGTGCTATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGCAACTATGTCTAC
CGCAAGGCGCTGTTGAATGTGCGCACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCTATT
CCCCGATATGTTGATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGATAATATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGATGGCCTTTCCAGCCTAATAGAACCCATTATGATGGTAGTTATCGGTACC
ATAGTCGGCGGCTTAATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.138

94.774

0.523
  pilC Acinetobacter baylyi ADP1

49.386

96.675

0.477
  pilC Legionella pneumophila strain ERS1305867

48.762

95.962

0.468
  pilC Acinetobacter baumannii D1279779

47.304

96.912

0.458
  pilC Vibrio cholerae strain A1552

46.384

95.249

0.442
  pilC Vibrio campbellii strain DS40M4

44.913

95.724

0.43
  pilG Neisseria meningitidis 44/76-A

42.271

98.337

0.416
  pilG Neisseria gonorrhoeae MS11

42.271

98.337

0.416

Multiple sequence alignment