Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K5624_RS02235 Genome accession   NZ_AP024612
Coordinates   474548..475462 (-) Length   304 a.a.
NCBI ID   WP_144224959.1    Uniprot ID   -
Organism   Shewanella algae strain TUM17378     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469548..480462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5624_RS02210 - 472269..472469 (-) 201 Protein_407 transposase -
  K5624_RS02215 (TUM17378_04170) mutT 472544..472942 (-) 399 WP_144379648.1 8-oxo-dGTP diphosphatase MutT -
  K5624_RS02220 (TUM17378_04180) yacG 472942..473154 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  K5624_RS02225 (TUM17378_04190) zapD 473199..473939 (-) 741 WP_028779562.1 cell division protein ZapD -
  K5624_RS02230 (TUM17378_04200) coaE 473936..474547 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  K5624_RS02235 (TUM17378_04210) pilD 474548..475462 (-) 915 WP_144224959.1 A24 family peptidase Machinery gene
  K5624_RS02240 (TUM17378_04220) pilC 475538..476803 (-) 1266 WP_144224958.1 type II secretion system F family protein Machinery gene
  K5624_RS02245 (TUM17378_04230) pilB 476959..478665 (-) 1707 WP_144224957.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5624_RS02250 (TUM17378_04240) - 478675..479088 (-) 414 WP_144224956.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33871.27 Da        Isoelectric Point: 7.2147

>NTDB_id=86523 K5624_RS02235 WP_144224959.1 474548..475462(-) (pilD) [Shewanella algae strain TUM17378]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLILPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELMTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGILLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=86523 K5624_RS02235 WP_144224959.1 474548..475462(-) (pilD) [Shewanella algae strain TUM17378]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCTGTAATAGG
CAGCTTTCTCAATGTGGTAATCCACCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTGGGTGAAGCCAAGCTTAATGCACCGATAGATAACTACCCGGCCAAATAC
AATCTGATACTGCCGAAGTCTGCCTGTCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCGATATTTGAGCTAATGACCGCTC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCAGGTACCTTTACTAATTTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATTTAAGCCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGAGCCCTAGTAGGCATTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGGC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

48.837

99.013

0.484
  pilD Vibrio cholerae strain A1552

49.658

96.053

0.477
  pilD Acinetobacter nosocomialis M2

48.013

99.342

0.477
  pilD Acinetobacter baumannii D1279779

47.682

99.342

0.474
  pilD Neisseria gonorrhoeae MS11

45.196

92.434

0.418

Multiple sequence alignment