Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K5626_RS02215 Genome accession   NZ_AP024610
Coordinates   471596..472864 (-) Length   422 a.a.
NCBI ID   WP_144220360.1    Uniprot ID   -
Organism   Shewanella algae strain TUM4442     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466596..477864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5626_RS02185 - 468264..468533 (-) 270 Protein_403 transposase -
  K5626_RS02190 (TUM4442_04140) mutT 468608..469006 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  K5626_RS02195 (TUM4442_04150) yacG 469006..469218 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  K5626_RS02200 (TUM4442_04160) zapD 469263..470003 (-) 741 WP_028779562.1 cell division protein ZapD -
  K5626_RS02205 (TUM4442_04170) coaE 470000..470611 (-) 612 WP_054744929.1 dephospho-CoA kinase -
  K5626_RS02210 (TUM4442_04180) pilD 470612..471526 (-) 915 WP_144220359.1 A24 family peptidase Machinery gene
  K5626_RS02215 (TUM4442_04190) pilC 471596..472864 (-) 1269 WP_144220360.1 type II secretion system F family protein Machinery gene
  K5626_RS02220 (TUM4442_04200) pilB 473023..474729 (-) 1707 WP_144159907.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5626_RS02225 (TUM4442_04210) - 474775..475206 (-) 432 WP_144220361.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K5626_RS02230 (TUM4442_04220) nadC 476075..476935 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K5626_RS02235 (TUM4442_04230) ampD 477127..477672 (+) 546 WP_025012051.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45769.94 Da        Isoelectric Point: 10.3084

>NTDB_id=86500 K5626_RS02215 WP_144220360.1 471596..472864(-) (pilC) [Shewanella algae strain TUM4442]
MATATAPAKNNKAKNKGAKPQPKIHTFTWKGLNRDGKLSSGELRGASITEVKNLLKGQGINPKTVRKKSTSLLGGDKKIK
PMDIAVITRQIATMLAAGVPLVTTIELIARGHEKNKVRTLLGTVLADIQAGIPLSDALRPHRVYFDDLYVDLVAAGEHSG
SLDAVFDRIATYKEKSEALKSKIKKAMFYPTAVIVVAIAVTALLLVVVVPQFEEVFRGFGAELPAFTQFIVSLSRGLQST
WYLFLAGIVISVWLFVRAHRNSENFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYV
YRKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIG
TIVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=86500 K5626_RS02215 WP_144220360.1 471596..472864(-) (pilC) [Shewanella algae strain TUM4442]
ATGGCAACCGCAACGGCACCAGCAAAAAACAATAAAGCCAAAAACAAAGGCGCCAAACCCCAGCCCAAGATCCATACCTT
TACCTGGAAGGGACTCAATCGTGACGGCAAACTCAGCTCCGGCGAACTGCGCGGCGCCAGTATCACCGAAGTAAAAAACC
TGCTTAAGGGGCAGGGGATTAACCCCAAGACGGTACGTAAAAAATCAACATCTCTTTTAGGAGGTGACAAAAAGATCAAG
CCGATGGATATCGCAGTGATCACCCGTCAGATAGCTACTATGCTGGCTGCCGGCGTACCACTGGTAACAACTATTGAGTT
GATCGCTCGCGGCCATGAAAAAAATAAGGTTCGTACTCTACTCGGCACTGTACTGGCCGATATCCAAGCCGGTATTCCAC
TCTCAGATGCCCTGCGCCCCCACAGAGTTTATTTTGACGACCTCTATGTCGACTTGGTGGCCGCCGGCGAGCATTCAGGT
TCTTTGGACGCCGTATTCGACCGTATCGCCACTTACAAGGAAAAATCCGAAGCATTAAAATCCAAGATCAAAAAAGCCAT
GTTCTATCCCACAGCTGTGATTGTGGTTGCTATTGCTGTTACTGCTTTATTATTGGTGGTTGTAGTACCTCAGTTTGAGG
AGGTATTCAGAGGATTTGGTGCAGAATTGCCAGCTTTTACTCAATTCATTGTTAGTTTAAGTAGAGGCTTGCAAAGCACT
TGGTATCTATTTTTGGCCGGTATCGTTATCAGTGTCTGGCTGTTTGTCCGTGCTCATCGAAATTCAGAAAATTTCCGTAA
CCGTATCGATGAAATGGTGCTTAAGATCCCCGCGATAGGAGATATCCTCCATAAAGGTGCCATGGCCCGCTTCGCCCGCA
CTCTGGCTACAACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGCAACTATGTC
TACCGCAAGGCGCTGTTAAATGTGCGTACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCT
ATTCCCCGATATGTTGATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGATAATATGCTCAACAAAGTCGCCA
ATATCTATGAGATGCAGGTAGACGATGCCGTAGATGGGCTCTCCAGCCTGATAGAACCTATTATGATGGTAGTAATCGGC
ACTATAGTCGGCGGACTTATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.14

94.55

0.531
  pilC Acinetobacter baylyi ADP1

49.14

96.445

0.474
  pilC Legionella pneumophila strain ERS1305867

49.257

95.735

0.472
  pilC Vibrio cholerae strain A1552

45.863

100

0.46
  pilC Acinetobacter baumannii D1279779

48.241

94.313

0.455
  pilC Vibrio campbellii strain DS40M4

44.417

95.498

0.424
  pilG Neisseria meningitidis 44/76-A

42.41

98.341

0.417
  pilG Neisseria gonorrhoeae MS11

42.512

98.104

0.417

Multiple sequence alignment