Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K5626_RS02210 Genome accession   NZ_AP024610
Coordinates   470612..471526 (-) Length   304 a.a.
NCBI ID   WP_144220359.1    Uniprot ID   -
Organism   Shewanella algae strain TUM4442     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 465612..476526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5626_RS02185 - 468264..468533 (-) 270 Protein_403 transposase -
  K5626_RS02190 (TUM4442_04140) mutT 468608..469006 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  K5626_RS02195 (TUM4442_04150) yacG 469006..469218 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  K5626_RS02200 (TUM4442_04160) zapD 469263..470003 (-) 741 WP_028779562.1 cell division protein ZapD -
  K5626_RS02205 (TUM4442_04170) coaE 470000..470611 (-) 612 WP_054744929.1 dephospho-CoA kinase -
  K5626_RS02210 (TUM4442_04180) pilD 470612..471526 (-) 915 WP_144220359.1 A24 family peptidase Machinery gene
  K5626_RS02215 (TUM4442_04190) pilC 471596..472864 (-) 1269 WP_144220360.1 type II secretion system F family protein Machinery gene
  K5626_RS02220 (TUM4442_04200) pilB 473023..474729 (-) 1707 WP_144159907.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K5626_RS02225 (TUM4442_04210) - 474775..475206 (-) 432 WP_144220361.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33869.24 Da        Isoelectric Point: 7.2147

>NTDB_id=86499 K5626_RS02210 WP_144220359.1 470612..471526(-) (pilD) [Shewanella algae strain TUM4442]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLILPKSACPKCGAHIKPWHNLPIIGYLLLGGKCTSCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=86499 K5626_RS02210 WP_144220359.1 470612..471526(-) (pilD) [Shewanella algae strain TUM4442]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCAGTGATAGG
CAGCTTTCTCAATGTGGTGATCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTAGGTGAAGCCAAGCTTAATGCACCAATAGATAACTATCCGGCCAAATAC
AATCTGATACTGCCGAAGTCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCACCTCCTGCAACACAGCTATTTCAGCGAGATACCCAATATTTGAGCTGCTGACCGCCC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCAGGTACCTTTACTAATCTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATTTAAGCCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGTAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGTGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGGC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)

Type IV leader peptidase family (Peptidase_A24)

(154-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

49.169

99.013

0.487
  pilD Vibrio cholerae strain A1552

50

96.053

0.48
  pilD Acinetobacter nosocomialis M2

48.013

99.342

0.477
  pilD Acinetobacter baumannii D1279779

47.682

99.342

0.474
  pilD Neisseria gonorrhoeae MS11

44.84

92.434

0.414

Multiple sequence alignment