NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	WAB15_RS15060	Genome accession	NZ_CP147982
Coordinates	3337653..3338255 (-)	Length	200 a.a.
NCBI ID	WP_174857796.1	Uniprot ID	A0ABZ2QYW6
Organism	Streptomyces sp. BP-8
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3332653..3343255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAB15_RS15045 (WAB15_15015)	-	3334024..3334980 (+)	957	WP_399150824.1	hypothetical protein	-
WAB15_RS15050 (WAB15_15020)	clpX	3335446..3336729 (-)	1284	WP_310716441.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
WAB15_RS15055 (WAB15_15025)	clpP	3336910..3337587 (-)	678	WP_399150839.1	ATP-dependent Clp protease proteolytic subunit	Regulator
WAB15_RS15060 (WAB15_15030)	clpP	3337653..3338255 (-)	603	WP_174857796.1	ATP-dependent Clp protease proteolytic subunit	Regulator
WAB15_RS15065 (WAB15_15035)	tig	3338551..3339930 (-)	1380	WP_399150825.1	trigger factor	-
WAB15_RS15080 (WAB15_15050)	-	3340688..3341059 (+)	372	WP_407286561.1	arsenate reductase family protein	-
WAB15_RS15085 (WAB15_15055)	-	3341170..3341364 (-)	195	WP_384440576.1	hypothetical protein	-
WAB15_RS15090 (WAB15_15060)	-	3341959..3343128 (+)	1170	WP_407286562.1	acyltransferase family protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21148.00 Da Isoelectric Point: 4.6831

                                >NTDB_id=863390 WAB15_RS15060 WP_174857796.1 3337653..3338255(-) (clpP) [Streptomyces sp. BP-8]

MPSAAAEPTFGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPEKDIFLYINSPGGSISAGLAIYDTMQYI

KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVER

ITQDSDRDRWFSADEAKEYGLIDDVMTSAAGVPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=863390 WAB15_RS15060 WP_174857796.1 3337653..3338255(-) (clpP) [Streptomyces sp. BP-8]

ATGCCTTCCGCCGCCGCTGAGCCGACCTTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT

CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTTCTCCTCGCCGCGGACCCGGAAA

AGGACATCTTCCTCTACATCAACTCCCCGGGCGGCTCGATCTCGGCCGGCTTGGCGATCTACGACACCATGCAGTACATC

AAGAACGACGTGGTGACGATCGCGATGGGCCTCGCCGCCTCCATGGGGCAGTTCCTGCTGAGCGCCGGCACCCCGGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCCGCCGGTCTGGCCGGCTCCGCGTCGGACATCAAGA

TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACGGCCTTCCACACCGGCCAGACCGTCGAGCGG

ATCACCCAGGACTCGGACCGCGACCGCTGGTTCTCCGCCGACGAGGCCAAGGAGTACGGCCTGATCGACGATGTGATGAC

CTCCGCCGCCGGGGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	54.787	94	0.515
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.105	95	0.495
clpP	Lactococcus lactis subsp. cremoris KW2	51.852	94.5	0.49
clpP	Streptococcus mutans UA159	50.785	95.5	0.485
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.785	95.5	0.485
clpP	Streptococcus thermophilus LMG 18311	50.262	95.5	0.48
clpP	Streptococcus thermophilus LMD-9	50.262	95.5	0.48
clpP	Streptococcus pyogenes JRS4	50.265	94.5	0.475
clpP	Streptococcus pyogenes MGAS315	50.265	94.5	0.475
clpP	Streptococcus pneumoniae Rx1	49.215	95.5	0.47
clpP	Streptococcus pneumoniae TIGR4	49.215	95.5	0.47
clpP	Streptococcus pneumoniae D39	49.215	95.5	0.47
clpP	Streptococcus pneumoniae R6	49.215	95.5	0.47

Detailed information NTG0863390