Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   WAB15_RS15055 Genome accession   NZ_CP147982
Coordinates   3336910..3337587 (-) Length   225 a.a.
NCBI ID   WP_399150839.1    Uniprot ID   A0ABZ2R4T7
Organism   Streptomyces sp. BP-8     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3331910..3342587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAB15_RS15045 (WAB15_15015) - 3334024..3334980 (+) 957 WP_399150824.1 hypothetical protein -
  WAB15_RS15050 (WAB15_15020) clpX 3335446..3336729 (-) 1284 WP_310716441.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  WAB15_RS15055 (WAB15_15025) clpP 3336910..3337587 (-) 678 WP_399150839.1 ATP-dependent Clp protease proteolytic subunit Regulator
  WAB15_RS15060 (WAB15_15030) clpP 3337653..3338255 (-) 603 WP_174857796.1 ATP-dependent Clp protease proteolytic subunit Regulator
  WAB15_RS15065 (WAB15_15035) tig 3338551..3339930 (-) 1380 WP_399150825.1 trigger factor -
  WAB15_RS15080 (WAB15_15050) - 3340688..3341059 (+) 372 WP_407286561.1 arsenate reductase family protein -
  WAB15_RS15085 (WAB15_15055) - 3341170..3341364 (-) 195 WP_384440576.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24751.06 Da        Isoelectric Point: 4.7288

>NTDB_id=863389 WAB15_RS15055 WP_399150839.1 3336910..3337587(-) (clpP) [Streptomyces sp. BP-8]
MNNFPGSGLHQRPEAEFSGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEDLLAKHSSTPIEKIRDDIERDKILTAEESLAYGLVDQIVSTRKSSVSIG

Nucleotide


Download         Length: 678 bp        

>NTDB_id=863389 WAB15_RS15055 WP_399150839.1 3336910..3337587(-) (clpP) [Streptomyces sp. BP-8]
ATGAACAACTTCCCCGGCAGCGGCCTCCACCAGCGCCCGGAGGCCGAGTTCTCCGGCCCGCGCGCGGAGTCCCGCTATAT
CGTCCCGCGCTTCGTCGAGCGCACGTCGCAGGGCGTGCGCGAGTACGACCCGTACGCCAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCGGCCGGCACCCCCG
GCAAGCGGATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCTCGCAGCTGGAGGACCTGCTCGCCAAGCACTCCTCCACGCCGAT
CGAGAAGATCCGTGATGACATCGAGCGTGACAAGATTCTGACCGCCGAGGAGTCCCTGGCGTACGGTCTGGTCGACCAGA
TCGTCTCGACGCGCAAGTCGTCGGTCTCGATCGGTTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.444

0.431
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

84

0.409
  clpP Streptococcus thermophilus LMD-9

45.361

86.222

0.391
  clpP Streptococcus pyogenes JRS4

45.361

86.222

0.391
  clpP Streptococcus pyogenes MGAS315

45.361

86.222

0.391
  clpP Streptococcus mutans UA159

45.361

86.222

0.391
  clpP Streptococcus thermophilus LMG 18311

45.361

86.222

0.391
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.889

0.387
  clpP Streptococcus pneumoniae Rx1

44.56

85.778

0.382
  clpP Streptococcus pneumoniae D39

44.56

85.778

0.382
  clpP Streptococcus pneumoniae R6

44.56

85.778

0.382
  clpP Streptococcus pneumoniae TIGR4

44.56

85.778

0.382
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.889

0.378