Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KI216_RS01300 Genome accession   NZ_AP024595
Coordinates   290393..291622 (-) Length   409 a.a.
NCBI ID   WP_005013295.1    Uniprot ID   N9C617
Organism   Acinetobacter bouvetii strain JCM 18991     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 285393..296622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI216_RS01275 (ACBO_02420) - 286731..287054 (+) 324 WP_005013307.1 pyrimidine/purine nucleoside phosphorylase -
  KI216_RS01280 (ACBO_02430) rlmB 287193..287942 (+) 750 WP_005013305.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KI216_RS01285 (ACBO_02440) - 287971..288891 (+) 921 WP_005013303.1 DMT family transporter -
  KI216_RS01290 (ACBO_02450) coaE 288888..289496 (-) 609 WP_005013302.1 dephospho-CoA kinase -
  KI216_RS16170 (ACBO_02460) pilD 289506..290369 (-) 864 WP_005013298.1 prepilin peptidase Machinery gene
  KI216_RS01300 (ACBO_02470) pilC 290393..291622 (-) 1230 WP_005013295.1 type II secretion system F family protein Machinery gene
  KI216_RS01305 (ACBO_02480) pilB 291658..293367 (-) 1710 WP_005013293.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KI216_RS01310 (ACBO_02490) tpiA 293643..294434 (+) 792 WP_005013292.1 triose-phosphate isomerase -
  KI216_RS01315 (ACBO_02500) secG 294448..294777 (+) 330 WP_005013290.1 preprotein translocase subunit SecG -
  KI216_RS01345 (ACBO_02510) rimP 295718..296254 (+) 537 WP_005013289.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44908.25 Da        Isoelectric Point: 9.8244

>NTDB_id=86292 KI216_RS01300 WP_005013295.1 290393..291622(-) (pilC) [Acinetobacter bouvetii strain JCM 18991]
MAVKKAQMMPTFSYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKNIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVLVVAAIVTIILMVKVVPVFQGLFSSFGAELPAFTQMVVAMSNWFQQYWFIFIIAVAAVIA
CFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYETAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVS

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=86292 KI216_RS01300 WP_005013295.1 290393..291622(-) (pilC) [Acinetobacter bouvetii strain JCM 18991]
ATGGCTGTCAAAAAAGCGCAGATGATGCCAACCTTCAGTTATGAAGGGATTGACCGTAAAGGGGCCAAACTCAAGGGGGA
ACTGCCGGCGCGCAACATGGCGCTGGCAAAAGTGACGTTGCGCAAGCAAGGCATTACCATTAAGAATATTCGGGAGAAGC
GCAAGAACATTCTCGAAGGATTGATGAAAAAGAAAGTGTCTACACTGGACATCACTATTTTTACCCGCCAGCTTGCGACG
ATGATGAAAGCCGGTGTTCCTTTGGTGCAGGGTTTTGAAATTGTTGCTGAAGGCCTTGAAAACCCATCTATGCGTGAAGT
TGTCTTAGGGATTAAAGGCGAAGTGGAAGGCGGCAATACTTTTGCCGGCGCACTGCGTAAATATCCGCAGTATTTTGATA
ACCTATTCTGTTCTCTAGTTGAATCAGGCGAACAGTCCGGCGCACTGGAAACCATGCTGGACCGTGTAGCGATTTACAAA
GAAAAAAGTGAACTGCTGAAGCAAAAAATTAAAAAAGCCATGAAGTATCCTGCAACAGTTCTTGTTGTCGCAGCTATTGT
CACGATTATCCTCATGGTCAAGGTAGTTCCTGTATTCCAAGGGCTTTTTTCATCTTTCGGTGCAGAACTTCCCGCATTTA
CGCAAATGGTTGTTGCCATGTCCAACTGGTTCCAGCAATATTGGTTTATCTTTATTATCGCTGTCGCTGCGGTCATTGCC
TGTTTCTTAGAAGCCAAAAAACGCAGCAAAAAATTTCGAGATTTTCTGGATAAAGCTGCGCTGAAAGCGCCGATTTTTGG
AGACTTGGTATATAAAGCGATTATCGCACGCTACAGCCGCACGCTGGCAACCACCTTTGCTGCCGGCGTACCGCTGATTG
ATGCACTGGAATCCACGGCAGGCGCAACCAACAACGTCGTCTATGAAACTGCGGTCATGAAGATCCGTGAAGACGTGGCA
ACCGGCCAGCAGCTGCAGTTTGCCATGCGGGTGACTGATAAATTTCCTTCTATGGCGGTACAGATGGTGGCCATTGGTGA
AGAGTCTGGCGCTCTGGATGCCATGCTGGATAAAGTGGCAACGCATTATGAAAATGAAGTCGACAATGCCGTTGACGGCT
TAACCTCTATGATGGAGCCTTTAATTATGGCCATTCTGGGTGTGCTGGTTGGCGGCTTAGTGATTGCCATGTACCTGCCA
ATCTTCCAGATGGGTTCTGTGGTTAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9C617

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.196

99.756

0.9
  pilC Acinetobacter baylyi ADP1

83.333

99.756

0.831
  pilC Pseudomonas stutzeri DSM 10701

60.494

99.022

0.599
  pilC Legionella pneumophila strain ERS1305867

53.086

99.022

0.526
  pilG Neisseria meningitidis 44/76-A

47.118

97.555

0.46
  pilG Neisseria gonorrhoeae MS11

47.118

97.555

0.46
  pilC Vibrio cholerae strain A1552

43.873

99.756

0.438
  pilC Vibrio campbellii strain DS40M4

41.584

98.778

0.411

Multiple sequence alignment