Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q5Z11_RS15475 Genome accession   NZ_CP130832
Coordinates   3462960..3464219 (+) Length   419 a.a.
NCBI ID   WP_303747216.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 610A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457960..3469219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5Z11_RS15455 pilB 3458727..3460457 (-) 1731 WP_303747214.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q5Z11_RS15460 - 3460624..3461406 (-) 783 WP_303747215.1 sterol desaturase family protein -
  Q5Z11_RS20755 - 3461551..3461895 (-) 345 WP_405051613.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q5Z11_RS15470 - 3462350..3462449 (-) 100 Protein_3041 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q5Z11_RS15475 pilC 3462960..3464219 (+) 1260 WP_303747216.1 type II secretion system F family protein Machinery gene
  Q5Z11_RS15480 pilD 3464227..3465093 (+) 867 WP_303747217.1 A24 family peptidase Machinery gene
  Q5Z11_RS15485 coaE 3465149..3465766 (+) 618 WP_303747218.1 dephospho-CoA kinase -
  Q5Z11_RS15490 - 3465921..3467261 (-) 1341 WP_303747219.1 HAMP domain-containing sensor histidine kinase -
  Q5Z11_RS15495 - 3467254..3467931 (-) 678 WP_303747220.1 response regulator transcription factor -
  Q5Z11_RS15500 - 3468123..3468290 (+) 168 WP_303747221.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45799.19 Da        Isoelectric Point: 10.1273

>NTDB_id=861502 Q5Z11_RS15475 WP_303747216.1 3462960..3464219(+) (pilC) [Stenotrophomonas sp. 610A2]
MAVTRNAINKEPVGRSTSLMQPFVWEGTDKRGVKMKGEQDAKNANLLKAELRRLGISPTVVKPKPKPLFGAAGKPIKPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMAKLVGTVRADLEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLETIANYQENLETLKGKIKKALFYPAMVVAVAILVSSVLLVWVVPQFEDIFKSFGTDLPVFTQMIVAASRFMVKWWWA
LLVVTVGVIVGVTYLYKRSPKMQYTLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKTYED
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEYFEQEVNNSVDALSSLLEPLIMVFIGTVV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=861502 Q5Z11_RS15475 WP_303747216.1 3462960..3464219(+) (pilC) [Stenotrophomonas sp. 610A2]
ATGGCCGTCACCCGCAACGCGATCAATAAAGAGCCGGTTGGGCGCAGCACCAGCCTGATGCAACCGTTTGTCTGGGAGGG
AACAGACAAACGCGGTGTGAAGATGAAAGGTGAGCAGGACGCCAAGAATGCGAACCTGCTGAAAGCAGAGCTACGCCGTC
TGGGCATCAGCCCAACCGTGGTCAAGCCCAAGCCCAAGCCCTTGTTCGGTGCCGCCGGCAAACCGATCAAACCGAAAGAC
ATTGCGTTTTTCAGCCGCCAGATGGCGACCATGATGAAGTCAGGCGTGCCCATTGTCAGCGCACTGGAGATCATCGGCAG
CGGCCACAAGAACCCGCGCATGGCCAAACTGGTGGGCACGGTTCGCGCCGATCTGGAAGGCGGCTCGTCCCTGTACGAGG
CCATCAGCAAGCACCCGGTGCAGTTCGACGAACTGTATCGCAACCTGGTACGAGCTGGCGAAGGCGCCGGTGTATTGGAA
ACCGTGCTGGAGACGATCGCCAACTACCAGGAAAACCTGGAGACGCTGAAAGGCAAGATCAAGAAGGCGCTGTTCTATCC
GGCCATGGTGGTAGCAGTGGCTATCCTGGTGAGCTCCGTACTGCTTGTGTGGGTTGTCCCCCAGTTCGAGGACATCTTCA
AGAGCTTTGGTACCGACCTACCTGTATTCACCCAGATGATCGTGGCCGCCTCCCGCTTCATGGTGAAATGGTGGTGGGCA
CTTCTGGTAGTTACAGTCGGCGTCATTGTTGGAGTGACCTACCTTTACAAGCGCTCGCCCAAGATGCAGTACACGCTTGA
TCGCCTAATCTTGAAGGTGCCGGTGATCGGCCAGATCATGCACAACAGCGCCATTGCCCGCTTTGCCCGCACCACCGCCG
TTACCTTCAAGGCCGGCGTACCGCTGGTGGAAGCACTGGGCATTGTTGCTGGCGCCACCGGCAACAAGACCTACGAGGAT
GCCGTGCTGCGCATGCGTGACGACGTATCCGTCGGCTACCCGGTCAACATGGCGATGAAGCAGGTAAACCTGTTCCCGCA
CATGGTGGTGCAGATGACCGCCATCGGCGAAGAGGCAGGTGCGCTGGATACGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTCAACAATTCGGTGGACGCATTGAGCAGTCTGCTGGAGCCCTTGATCATGGTCTTCATCGGCACCGTCGTT
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGCGTCTGTTGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.01

94.511

0.482
  pilC Acinetobacter baylyi ADP1

49.261

96.897

0.477
  pilC Legionella pneumophila strain ERS1305867

50

94.511

0.473
  pilC Acinetobacter baumannii D1279779

48.395

96.659

0.468
  pilG Neisseria gonorrhoeae MS11

41.25

95.465

0.394
  pilG Neisseria meningitidis 44/76-A

40.399

95.704

0.387
  pilC Vibrio cholerae strain A1552

40

95.465

0.382
  pilC Vibrio campbellii strain DS40M4

39.25

95.465

0.375