Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q5Z11_RS15480 Genome accession   NZ_CP130832
Coordinates   3464227..3465093 (+) Length   288 a.a.
NCBI ID   WP_303747217.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 610A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3459227..3470093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5Z11_RS15460 - 3460624..3461406 (-) 783 WP_303747215.1 sterol desaturase family protein -
  Q5Z11_RS20755 - 3461551..3461895 (-) 345 WP_405051613.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q5Z11_RS15470 - 3462350..3462449 (-) 100 Protein_3041 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q5Z11_RS15475 pilC 3462960..3464219 (+) 1260 WP_303747216.1 type II secretion system F family protein Machinery gene
  Q5Z11_RS15480 pilD 3464227..3465093 (+) 867 WP_303747217.1 A24 family peptidase Machinery gene
  Q5Z11_RS15485 coaE 3465149..3465766 (+) 618 WP_303747218.1 dephospho-CoA kinase -
  Q5Z11_RS15490 - 3465921..3467261 (-) 1341 WP_303747219.1 HAMP domain-containing sensor histidine kinase -
  Q5Z11_RS15495 - 3467254..3467931 (-) 678 WP_303747220.1 response regulator transcription factor -
  Q5Z11_RS15500 - 3468123..3468290 (+) 168 WP_303747221.1 hypothetical protein -
  Q5Z11_RS15505 rimK 3468376..3469251 (-) 876 WP_303747222.1 30S ribosomal protein S6--L-glutamate ligase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32053.15 Da        Isoelectric Point: 8.4724

>NTDB_id=861503 Q5Z11_RS15480 WP_303747217.1 3464227..3465093(+) (pilD) [Stenotrophomonas sp. 610A2]
MAFLDQHPGLGYPAAVGLGLLIGSFLNVVILRLPKRMEWQWKRDAREILELPDIYEPPPPGIVVEPSHCPHCKHKLSWYE
NIPLFSWLIQRGKCRHCQAPISIQYPIVELVTALMVLASVWQFGFGWQGFGAIVLSCFLVTLSGIDLRTQLLPDQLTLPL
MWLGLIGSMDNLYMPAKPALIGAAVGYLSLWTVWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILLSSLVGAIV
GSIWLYSRGRDRATPIPFGPYLAIAGWLVFMWGDQMIGGYMRLSGLQQ

Nucleotide


Download         Length: 867 bp        

>NTDB_id=861503 Q5Z11_RS15480 WP_303747217.1 3464227..3465093(+) (pilD) [Stenotrophomonas sp. 610A2]
ATGGCATTTCTCGACCAGCATCCCGGCCTCGGCTATCCCGCCGCGGTCGGACTGGGACTGCTGATCGGCAGCTTCCTCAA
TGTGGTGATCCTGCGCTTGCCCAAGCGCATGGAGTGGCAGTGGAAGCGGGATGCTCGCGAAATCCTCGAGCTTCCCGATA
TCTATGAGCCGCCGCCGCCGGGGATCGTGGTCGAACCTTCGCACTGCCCGCACTGCAAGCACAAGCTGAGCTGGTACGAG
AACATCCCGCTGTTCAGTTGGCTGATCCAGCGCGGCAAGTGCCGGCATTGCCAGGCCCCCATCTCCATCCAGTACCCGAT
CGTGGAACTGGTCACCGCCTTGATGGTGCTGGCCAGCGTCTGGCAGTTCGGGTTTGGCTGGCAGGGCTTTGGCGCGATCG
TGCTGAGCTGCTTCCTGGTGACGCTGTCCGGTATCGATCTGCGCACCCAGCTTTTGCCCGACCAGCTCACCCTGCCACTG
ATGTGGCTGGGCCTGATTGGAAGCATGGACAACCTCTACATGCCAGCCAAGCCTGCCCTGATTGGCGCGGCGGTCGGTTA
TCTGTCGCTATGGACGGTGTGGTGGCTGTTCAAGCAGCTCACCGGCAAGGAAGGCATGGGCCACGGTGACTTCAAGCTGC
TGGCTGCACTGGGCGCCTGGTGCGGGCTCAAGGGCATCCTGCCGATCATCCTGCTGTCCTCACTGGTCGGCGCCATCGTC
GGCTCGATCTGGCTGTATTCCCGCGGCCGCGATCGGGCTACTCCAATCCCGTTTGGCCCCTACCTGGCCATCGCCGGCTG
GCTGGTCTTCATGTGGGGCGACCAGATGATAGGCGGTTACATGCGCCTGTCAGGGCTACAGCAATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

48.264

100

0.483
  pilD Acinetobacter nosocomialis M2

48.41

98.264

0.476
  pilD Vibrio campbellii strain DS40M4

47.183

98.611

0.465
  pilD Vibrio cholerae strain A1552

49.446

94.097

0.465
  pilD Neisseria gonorrhoeae MS11

43.682

96.181

0.42