Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q2K57_RS14460 Genome accession   NZ_CP130701
Coordinates   3214614..3215849 (-) Length   411 a.a.
NCBI ID   WP_369700270.1    Uniprot ID   -
Organism   Halomonas sp. I5-271120     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3209614..3220849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2K57_RS14435 - 3210832..3211209 (+) 378 WP_112055798.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  Q2K57_RS14440 - 3211816..3212727 (-) 912 WP_304525500.1 DNA replication terminus site-binding protein -
  Q2K57_RS14445 yacG 3212740..3212967 (-) 228 WP_112055800.1 DNA gyrase inhibitor YacG -
  Q2K57_RS14450 coaE 3213061..3213672 (-) 612 WP_304525501.1 dephospho-CoA kinase -
  Q2K57_RS14455 pilD 3213669..3214520 (-) 852 WP_304525502.1 A24 family peptidase Machinery gene
  Q2K57_RS14460 pilC 3214614..3215849 (-) 1236 WP_369700270.1 type II secretion system F family protein Machinery gene
  Q2K57_RS14465 pilB 3215908..3217677 (-) 1770 WP_304525504.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q2K57_RS18375 - 3218064..3218444 (+) 381 WP_369700271.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q2K57_RS14475 - 3218831..3220096 (+) 1266 WP_304525505.1 O-antigen ligase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45158.91 Da        Isoelectric Point: 10.0598

>NTDB_id=861100 Q2K57_RS14460 WP_369700270.1 3214614..3215849(-) (pilC) [Halomonas sp. I5-271120]
MPMARQPKQKKPAKLQRWKWTGKGPGGRRVSGEIVAKEKQEVERQLNSQNILIKSIRRKSSLGSGMSKIKSRDIMIFARQ
LATMIKAGVPMLQAFSVVAESLKNPTMSALVQELMNDVSAGTSFSDALRKHPKHFDRLFTNMIEAGEQSGSLDHMLEKVA
SYKEKIETLKGRVKKALYYPVAVISVGIGVTALLLIKVVPQFESLFQGFGAELPAMTRMTIAMSEFAQQYWLWGIGLIVA
SIMLIRQGMRRSDAFTYRMHALALKIPVIGDILDKSSVSRYSSTLATTFGAGVPLVEALETAAGASGNKVYERAVLQVRD
DVSAGQQLHFAMRLTEQFPALAVQMVGIGEEAGSLDAMLNRVAEYYEEEVDNKVDALTSLLEPFIIVVLGVLVGGLVVSM
YLPIFELGSVI

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=861100 Q2K57_RS14460 WP_369700270.1 3214614..3215849(-) (pilC) [Halomonas sp. I5-271120]
ATGCCCATGGCGCGACAGCCCAAGCAAAAAAAACCAGCAAAGCTGCAACGTTGGAAATGGACAGGCAAAGGCCCCGGCGG
GCGGCGGGTCTCAGGAGAGATCGTTGCCAAAGAGAAGCAAGAGGTCGAGCGGCAACTCAATAGCCAGAACATTCTCATCA
AGAGCATACGCCGCAAGAGCAGCCTTGGCAGTGGTATGAGCAAGATCAAGTCACGCGATATCATGATCTTCGCCCGCCAG
CTGGCGACCATGATCAAGGCGGGCGTGCCCATGCTGCAGGCCTTCTCTGTGGTAGCGGAAAGCCTCAAGAATCCAACCAT
GAGCGCCCTGGTCCAGGAGCTGATGAACGATGTCTCGGCGGGCACCAGTTTTTCCGACGCGCTGCGCAAGCATCCCAAAC
ACTTCGATCGACTGTTTACCAACATGATCGAAGCAGGTGAACAGTCAGGCTCTCTTGACCATATGCTGGAGAAGGTGGCC
AGCTACAAAGAGAAGATCGAAACGCTCAAGGGGCGCGTCAAGAAGGCGCTCTATTACCCCGTCGCCGTCATTTCGGTGGG
TATTGGCGTGACTGCACTACTGCTGATCAAGGTGGTCCCCCAGTTCGAGAGCCTGTTTCAGGGCTTTGGTGCTGAGCTCC
CGGCAATGACACGCATGACCATCGCCATGTCCGAATTCGCCCAGCAATACTGGCTTTGGGGAATCGGACTGATTGTTGCG
AGCATCATGCTGATTCGCCAGGGCATGAGACGATCCGATGCCTTCACCTACCGGATGCATGCCCTGGCGCTAAAGATACC
GGTGATCGGCGACATTCTCGACAAGTCATCGGTGTCGCGATACTCAAGCACACTCGCCACCACGTTCGGTGCCGGCGTCC
CGCTTGTCGAGGCGCTCGAGACTGCCGCTGGCGCCTCCGGCAACAAGGTATACGAACGTGCCGTACTCCAGGTGCGCGAT
GATGTCTCAGCCGGGCAGCAGCTGCACTTCGCCATGCGTCTGACGGAACAATTTCCGGCGCTCGCCGTACAGATGGTGGG
TATCGGCGAGGAAGCCGGTTCGCTGGATGCGATGCTCAACCGGGTGGCGGAGTACTACGAGGAGGAGGTCGACAACAAGG
TCGATGCCCTTACCTCGCTGCTCGAGCCGTTCATTATCGTCGTACTCGGCGTTCTGGTCGGTGGCCTCGTTGTATCAATG
TATCTGCCAATCTTCGAGCTAGGCAGCGTTATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(283-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.365

98.054

0.504
  pilC Acinetobacter baylyi ADP1

51.111

98.54

0.504
  pilC Acinetobacter baumannii D1279779

50.864

98.54

0.501
  pilC Legionella pneumophila strain ERS1305867

47.901

98.54

0.472
  pilC Vibrio campbellii strain DS40M4

44.417

98.054

0.436
  pilC Vibrio cholerae strain A1552

44.417

98.054

0.436
  pilG Neisseria meningitidis 44/76-A

42.75

97.324

0.416
  pilG Neisseria gonorrhoeae MS11

42.537

97.81

0.416