Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q2K57_RS14455 Genome accession   NZ_CP130701
Coordinates   3213669..3214520 (-) Length   283 a.a.
NCBI ID   WP_304525502.1    Uniprot ID   -
Organism   Halomonas sp. I5-271120     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3208669..3219520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2K57_RS14430 bioA 3209309..3210595 (-) 1287 WP_304525499.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  Q2K57_RS14435 - 3210832..3211209 (+) 378 WP_112055798.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  Q2K57_RS14440 - 3211816..3212727 (-) 912 WP_304525500.1 DNA replication terminus site-binding protein -
  Q2K57_RS14445 yacG 3212740..3212967 (-) 228 WP_112055800.1 DNA gyrase inhibitor YacG -
  Q2K57_RS14450 coaE 3213061..3213672 (-) 612 WP_304525501.1 dephospho-CoA kinase -
  Q2K57_RS14455 pilD 3213669..3214520 (-) 852 WP_304525502.1 A24 family peptidase Machinery gene
  Q2K57_RS14460 pilC 3214614..3215849 (-) 1236 WP_369700270.1 type II secretion system F family protein Machinery gene
  Q2K57_RS14465 pilB 3215908..3217677 (-) 1770 WP_304525504.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q2K57_RS18375 - 3218064..3218444 (+) 381 WP_369700271.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30484.83 Da        Isoelectric Point: 7.5559

>NTDB_id=861099 Q2K57_RS14455 WP_304525502.1 3213669..3214520(-) (pilD) [Halomonas sp. I5-271120]
MLADLPPTLFWPLIIVLGLCLGSFLNVVVTRLPVMLMQGWRAEAREALELEEESPASFNLVTPASQCPACNAPISWHDNI
PLLGFLKRRGKCASCKQPISLQYPMIEIAGMALVVAVIAIHGASLQSLFLIGACLALLALAVIDFRTQLLPDIITLPLLW
VGLGYQLMFQPLMLTSAVIGAMAGYLSLWSFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQTLPMVLILSAGVGAIIGI
LIQIIIPRLRGAPMPFGPFLAMAGWIALLAGAPLQAAYQGLIS

Nucleotide


Download         Length: 852 bp        

>NTDB_id=861099 Q2K57_RS14455 WP_304525502.1 3213669..3214520(-) (pilD) [Halomonas sp. I5-271120]
TTGCTTGCCGATCTTCCCCCTACCCTGTTCTGGCCGCTGATCATTGTCCTCGGTCTATGCCTGGGCAGCTTCCTGAACGT
CGTGGTCACTCGGCTGCCTGTGATGCTGATGCAAGGCTGGCGAGCAGAAGCCCGCGAGGCGCTGGAGCTGGAGGAAGAGT
CGCCGGCCAGTTTCAACCTGGTGACCCCAGCCTCGCAGTGTCCGGCCTGTAATGCTCCTATCAGCTGGCACGACAATATC
CCTCTGCTCGGCTTTCTGAAGCGGCGGGGAAAATGCGCGAGCTGCAAGCAACCTATCAGCCTGCAATATCCCATGATTGA
GATTGCCGGCATGGCGCTGGTCGTCGCCGTCATCGCCATCCACGGCGCGAGCCTTCAGAGCCTCTTTTTGATAGGCGCCT
GCCTGGCCTTGCTCGCTCTAGCGGTGATCGACTTTCGCACTCAGCTGCTGCCCGACATCATCACCCTCCCCCTGCTATGG
GTCGGGCTTGGCTACCAGTTGATGTTTCAACCACTCATGCTTACCTCGGCAGTCATTGGTGCCATGGCCGGCTATCTTTC
GCTATGGAGCTTCTACTGGCTATTCAAGCTCGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCAAACTGCTGGCCG
CGCTGGGGGCCTGGCTGGGCTGGCAGACCCTGCCCATGGTGCTGATACTATCGGCTGGCGTGGGCGCCATCATTGGTATC
CTCATTCAGATTATCATTCCACGACTGCGTGGCGCTCCGATGCCCTTCGGCCCCTTCCTGGCCATGGCTGGCTGGATTGC
CCTGCTAGCCGGCGCACCGCTGCAGGCCGCCTATCAGGGCCTGATATCATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-240)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.676

96.113

0.516
  pilD Vibrio campbellii strain DS40M4

47.464

97.527

0.463
  pilD Acinetobacter nosocomialis M2

46.84

95.053

0.445
  pilD Acinetobacter baumannii D1279779

46.468

95.053

0.442
  pilD Neisseria gonorrhoeae MS11

44.815

95.406

0.428