Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q3Y66_RS08940 Genome accession   NZ_CP130610
Coordinates   1905153..1906382 (-) Length   409 a.a.
NCBI ID   WP_008956859.1    Uniprot ID   G4F3I3
Organism   Halomonas sp. HAL1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1900153..1911382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y66_RS08905 (Q3Y66_08905) - 1900179..1900490 (-) 312 Protein_1750 helix-turn-helix transcriptional regulator -
  Q3Y66_RS08910 (Q3Y66_08910) - 1900852..1901196 (+) 345 WP_008957330.1 hypothetical protein -
  Q3Y66_RS08915 (Q3Y66_08915) - 1901285..1902298 (+) 1014 WP_303319479.1 IS630 family transposase -
  Q3Y66_RS08920 (Q3Y66_08920) - 1902325..1903212 (-) 888 WP_035586313.1 DNA replication terminus site-binding protein -
  Q3Y66_RS08925 (Q3Y66_08925) yacG 1903252..1903485 (-) 234 WP_008956862.1 DNA gyrase inhibitor YacG -
  Q3Y66_RS08930 (Q3Y66_08930) coaE 1903519..1904121 (-) 603 WP_008956861.1 dephospho-CoA kinase -
  Q3Y66_RS08935 (Q3Y66_08935) pilD 1904231..1905076 (-) 846 WP_008956860.1 A24 family peptidase Machinery gene
  Q3Y66_RS08940 (Q3Y66_08940) pilC 1905153..1906382 (-) 1230 WP_008956859.1 type II secretion system F family protein Machinery gene
  Q3Y66_RS08945 (Q3Y66_08945) pilB 1906386..1908158 (-) 1773 WP_008956858.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q3Y66_RS08950 (Q3Y66_08950) - 1908540..1908947 (+) 408 WP_008956857.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q3Y66_RS08955 (Q3Y66_08955) - 1909183..1909632 (+) 450 WP_008956855.1 anti-virulence regulator CigR family protein -
  Q3Y66_RS08960 (Q3Y66_08960) - 1909727..1910542 (+) 816 WP_008956854.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44769.51 Da        Isoelectric Point: 10.3189

>NTDB_id=860638 Q3Y66_RS08940 WP_008956859.1 1905153..1906382(-) (pilC) [Halomonas sp. HAL1]
MANARRGRRPSLQLYRWKWAGKGPQDRTLSGETLGRSKAEVTAELAGQSINVKRIRKINSLSGAGRIKPTDVMVFARQMA
TMIRAGIPLLQAFQVVGESLKKPAMAMLVEQMRSDVSSGSSFSDALRRHPKHFDQLFVNLIDAGEQAGALDQMLDRVASY
KEKVESLKSRVKKALWYPSAVMIVGMSVTLLLLIKVVPQFESMFSNFDAELPALTQMTVNLSELAQRYWLVALGSLVATV
LAIKISVQRSPKIAYGMDVLVLRLPVIGDIMHKSALARFARTLATTFASGVPLMEGLETASGAVGNKVYERAVIQTRKDV
ATGQQLHFAMRMTNRFPPLAIQMVSIGEESGALDAMLNRVADYYEEEVDNKVDALTSLMEPIIIVVLGVLVGGVVVSIYL
PIFSLGSAL

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=860638 Q3Y66_RS08940 WP_008956859.1 1905153..1906382(-) (pilC) [Halomonas sp. HAL1]
ATGGCAAACGCTCGGCGTGGGCGTCGCCCATCTCTTCAACTTTACCGTTGGAAATGGGCGGGTAAAGGCCCTCAAGACAG
AACACTGAGCGGCGAAACCCTTGGCCGTAGTAAAGCGGAGGTAACGGCTGAACTGGCGGGGCAAAGCATCAATGTTAAGC
GCATTCGCAAAATAAACAGCCTCAGCGGCGCAGGCCGTATTAAGCCTACCGACGTGATGGTTTTTGCGCGCCAAATGGCG
ACCATGATTCGCGCCGGCATTCCTTTGTTACAGGCTTTCCAAGTCGTTGGCGAAAGTCTGAAAAAGCCCGCCATGGCGAT
GTTGGTAGAGCAGATGAGAAGCGATGTTTCATCGGGCTCAAGTTTTTCTGATGCGTTACGCCGTCACCCAAAACATTTTG
ATCAATTGTTTGTTAACCTCATCGATGCTGGCGAACAAGCTGGTGCGCTGGATCAGATGCTAGACCGTGTCGCGAGTTAC
AAAGAGAAAGTGGAATCGCTAAAATCGCGCGTTAAGAAAGCCCTTTGGTACCCTAGTGCCGTGATGATCGTCGGGATGTC
AGTCACCCTGCTGCTGCTGATTAAAGTCGTCCCTCAGTTTGAAAGCATGTTTAGTAATTTTGATGCGGAGCTTCCCGCCC
TGACTCAAATGACCGTTAACTTATCCGAGCTTGCTCAGCGCTATTGGCTTGTGGCCCTGGGTAGCCTGGTGGCCACGGTG
CTGGCCATCAAAATAAGCGTTCAACGCTCACCCAAAATTGCTTATGGCATGGACGTTTTGGTGCTTCGCTTACCGGTGAT
CGGCGACATTATGCATAAATCCGCCCTTGCCCGTTTTGCGCGCACCTTAGCCACGACCTTTGCTTCCGGCGTACCCTTGA
TGGAAGGTTTAGAGACCGCCTCTGGGGCCGTGGGCAATAAAGTTTATGAACGCGCCGTGATACAAACCCGTAAAGATGTT
GCGACCGGGCAGCAGCTACACTTTGCCATGCGCATGACCAACCGCTTTCCTCCCCTGGCAATTCAAATGGTGAGCATCGG
TGAAGAGTCGGGGGCGCTGGATGCGATGTTGAACCGCGTCGCTGATTATTACGAAGAAGAAGTCGACAATAAAGTCGACG
CCCTCACCTCCCTAATGGAGCCGATTATTATCGTCGTACTGGGCGTACTGGTGGGCGGCGTCGTTGTGTCTATATACTTG
CCAATTTTCAGCTTAGGCTCGGCTCTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4F3I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.654

96.088

0.496
  pilC Acinetobacter baumannii D1279779

51.958

93.643

0.487
  pilC Acinetobacter baylyi ADP1

50.653

93.643

0.474
  pilC Legionella pneumophila strain ERS1305867

48.139

98.533

0.474
  pilC Vibrio campbellii strain DS40M4

43.103

99.267

0.428
  pilC Vibrio cholerae strain A1552

41.791

98.289

0.411
  pilG Neisseria meningitidis 44/76-A

41.919

96.822

0.406
  pilG Neisseria gonorrhoeae MS11

41.919

96.822

0.406