Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | K6J80_RS02485 | Genome accession | NZ_AP024553 |
| Coordinates | 513944..514405 (-) | Length | 153 a.a. |
| NCBI ID | WP_000649326.1 | Uniprot ID | A0A0X1KZH2 |
| Organism | Vibrio cholerae strain IDH-03329 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 508944..519405
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J80_RS02465 | coaE | 509448..510056 (-) | 609 | WP_000011557.1 | dephospho-CoA kinase | - |
| K6J80_RS02470 | - | 510053..510929 (-) | 877 | Protein_466 | prepilin peptidase | - |
| K6J80_RS02475 | pilC | 510987..512213 (-) | 1227 | WP_000648511.1 | type II secretion system F family protein | Machinery gene |
| K6J80_RS02480 | pilB | 512256..513944 (-) | 1689 | WP_000957200.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| K6J80_RS02485 | pilA | 513944..514405 (-) | 462 | WP_000649326.1 | pilin | Machinery gene |
| K6J80_RS02490 | nadC | 514651..515541 (-) | 891 | WP_000665274.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| K6J80_RS02495 | ampD | 515837..516382 (+) | 546 | WP_000567318.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| K6J80_RS02500 | fldB | 516662..517180 (-) | 519 | WP_000690112.1 | flavodoxin FldB | - |
| K6J80_RS02505 | xerD | 517318..518226 (+) | 909 | WP_001287472.1 | site-specific tyrosine recombinase XerD | - |
| K6J80_RS02510 | dsbC | 518243..518995 (+) | 753 | WP_000115055.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 15722.14 Da Isoelectric Point: 8.9860
>NTDB_id=85879 K6J80_RS02485 WP_000649326.1 513944..514405(-) (pilA) [Vibrio cholerae strain IDH-03329]
MKAYKNKQQKGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSAIGVGLANITALKTNIEDYIATEGSFPATTAGTAAGFT
RLGTVEDMGDGKIVIAPTASGALGGTIKYTFDAGVVSSSKIQLARDANGLWTCSTTVTSEIAPKGCTAGATIN
MKAYKNKQQKGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSAIGVGLANITALKTNIEDYIATEGSFPATTAGTAAGFT
RLGTVEDMGDGKIVIAPTASGALGGTIKYTFDAGVVSSSKIQLARDANGLWTCSTTVTSEIAPKGCTAGATIN
Nucleotide
Download Length: 462 bp
>NTDB_id=85879 K6J80_RS02485 WP_000649326.1 513944..514405(-) (pilA) [Vibrio cholerae strain IDH-03329]
ATGAAAGCGTATAAAAACAAACAACAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCAGTGATTGGTGTGTT
GGCAGCGATTGCAATTCCTCAATATCAAAATTATGTAAAAAAATCAGCTATTGGGGTTGGCTTAGCAAACATCACAGCAC
TGAAAACTAATATTGAAGATTATATTGCGACAGAAGGCTCTTTTCCTGCAACAACTGCAGGTACGGCCGCAGGATTTACA
CGCTTAGGTACTGTTGAAGACATGGGTGACGGTAAGATTGTAATTGCCCCAACAGCATCAGGTGCATTAGGAGGTACAAT
AAAATACACATTCGATGCTGGTGTAGTATCTAGTTCAAAAATCCAATTAGCAAGAGATGCCAATGGATTATGGACTTGTA
GTACCACCGTTACTAGTGAAATAGCACCAAAAGGCTGTACTGCAGGTGCAACAATTAACTAA
ATGAAAGCGTATAAAAACAAACAACAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCAGTGATTGGTGTGTT
GGCAGCGATTGCAATTCCTCAATATCAAAATTATGTAAAAAAATCAGCTATTGGGGTTGGCTTAGCAAACATCACAGCAC
TGAAAACTAATATTGAAGATTATATTGCGACAGAAGGCTCTTTTCCTGCAACAACTGCAGGTACGGCCGCAGGATTTACA
CGCTTAGGTACTGTTGAAGACATGGGTGACGGTAAGATTGTAATTGCCCCAACAGCATCAGGTGCATTAGGAGGTACAAT
AAAATACACATTCGATGCTGGTGTAGTATCTAGTTCAAAAATCCAATTAGCAAGAGATGCCAATGGATTATGGACTTGTA
GTACCACCGTTACTAGTGAAATAGCACCAAAAGGCTGTACTGCAGGTGCAACAATTAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
100 |
100 |
1 |
| pilA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| pilA | Pseudomonas aeruginosa PAK |
42.675 |
100 |
0.438 |
| pilA | Acinetobacter baumannii strain A118 |
42.667 |
98.039 |
0.418 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.892 |
96.732 |
0.405 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.86 |
93.464 |
0.373 |
| pilA2 | Legionella pneumophila str. Paris |
39.31 |
94.771 |
0.373 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.621 |
94.771 |
0.366 |