Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | LYSHEL_RS04010 | Genome accession | NZ_AP024546 |
| Coordinates | 797170..798369 (+) | Length | 399 a.a. |
| NCBI ID | WP_244858717.1 | Uniprot ID | - |
| Organism | Lysobacter helvus strain JCM32364 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 792170..803369
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LYSHEL_RS03990 (LYSHEL_07790) | - | 792528..793265 (-) | 738 | WP_213435883.1 | class I SAM-dependent methyltransferase | - |
| LYSHEL_RS03995 (LYSHEL_07800) | - | 793262..794386 (-) | 1125 | WP_213435885.1 | glycosyltransferase family 4 protein | - |
| LYSHEL_RS04000 (LYSHEL_07810) | - | 794397..795248 (-) | 852 | WP_213435887.1 | glycosyltransferase family 2 protein | - |
| LYSHEL_RS04005 (LYSHEL_07820) | pilB | 795367..797091 (+) | 1725 | WP_213435889.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LYSHEL_RS04010 (LYSHEL_07830) | pilC | 797170..798369 (+) | 1200 | WP_244858717.1 | type II secretion system F family protein | Machinery gene |
| LYSHEL_RS04015 (LYSHEL_07840) | - | 798387..799250 (+) | 864 | WP_213435893.1 | A24 family peptidase | - |
| LYSHEL_RS04020 (LYSHEL_07850) | coaE | 799255..799878 (+) | 624 | WP_213435895.1 | dephospho-CoA kinase | - |
| LYSHEL_RS04025 (LYSHEL_07860) | - | 799880..800818 (-) | 939 | WP_213435897.1 | Nudix family hydrolase | - |
Sequence
Protein
Download Length: 399 a.a. Molecular weight: 43558.67 Da Isoelectric Point: 10.0856
>NTDB_id=85853 LYSHEL_RS04010 WP_244858717.1 797170..798369(+) (pilC) [Lysobacter helvus strain JCM32364]
MPTFIWVGNDKRGMKMKGEQQAKTANALRAELRKQGITPTVVKPKPKDIFGGAGKRITPKDIAVFSRQIATMLKSGVPIV
TSMEIIAGGQKNPKMRDLVNTIRTDIESGSSLSESLTKHPVQFDELYRNLVKAGESAGVLDTVLDTVATYKENIETLKGK
IKKAMFYPAMVVAVALLVSAILLVFVVPQFEDVFKNFGAELPAFTQMVINLSKFMVKWWWAIGGFVAAIVVGFIMAKKRS
PAVQHFLDRLVLKLPVIGKIMHEAALARFSRTLAVTFAAGVPLVEALETVAGATGNTVYEHAVKRIRDDVAVGYQVNVAM
KQTQLFPHMVVQMTAIGEEAGALDTMLYKVAEFYEMEVNNAVDALASLLEPLIVVMLGVIVGSMVVAMYLPIFKLAAVV
MPTFIWVGNDKRGMKMKGEQQAKTANALRAELRKQGITPTVVKPKPKDIFGGAGKRITPKDIAVFSRQIATMLKSGVPIV
TSMEIIAGGQKNPKMRDLVNTIRTDIESGSSLSESLTKHPVQFDELYRNLVKAGESAGVLDTVLDTVATYKENIETLKGK
IKKAMFYPAMVVAVALLVSAILLVFVVPQFEDVFKNFGAELPAFTQMVINLSKFMVKWWWAIGGFVAAIVVGFIMAKKRS
PAVQHFLDRLVLKLPVIGKIMHEAALARFSRTLAVTFAAGVPLVEALETVAGATGNTVYEHAVKRIRDDVAVGYQVNVAM
KQTQLFPHMVVQMTAIGEEAGALDTMLYKVAEFYEMEVNNAVDALASLLEPLIVVMLGVIVGSMVVAMYLPIFKLAAVV
Nucleotide
Download Length: 1200 bp
>NTDB_id=85853 LYSHEL_RS04010 WP_244858717.1 797170..798369(+) (pilC) [Lysobacter helvus strain JCM32364]
ATGCCGACCTTCATCTGGGTGGGCAACGACAAGCGCGGCATGAAGATGAAGGGCGAGCAGCAGGCCAAGACGGCCAACGC
GCTGCGCGCCGAACTGCGCAAGCAGGGCATCACGCCCACCGTGGTCAAGCCCAAGCCGAAGGACATCTTCGGCGGCGCCG
GCAAGCGCATCACGCCGAAGGACATCGCGGTGTTCAGCCGCCAGATCGCGACCATGCTCAAGTCGGGCGTGCCGATCGTG
ACGTCGATGGAAATCATCGCGGGCGGCCAGAAGAACCCGAAGATGCGCGACCTGGTCAACACGATCCGGACCGACATCGA
AAGCGGTTCGTCGCTGTCCGAATCGCTCACCAAGCATCCGGTGCAGTTCGACGAGCTCTATCGCAACCTGGTCAAGGCGG
GCGAATCGGCGGGCGTGCTCGACACGGTGCTCGACACCGTGGCGACGTACAAGGAAAACATCGAAACGCTGAAGGGCAAG
ATCAAGAAGGCGATGTTCTACCCCGCGATGGTCGTCGCGGTCGCCCTGCTCGTCAGCGCCATCCTGCTCGTGTTCGTGGT
GCCGCAGTTCGAAGACGTCTTCAAGAACTTCGGCGCCGAGCTGCCGGCCTTCACCCAGATGGTGATCAACCTCAGCAAGT
TCATGGTCAAGTGGTGGTGGGCGATCGGCGGCTTCGTGGCCGCGATCGTCGTCGGCTTCATCATGGCGAAGAAGCGCTCG
CCCGCCGTGCAGCACTTCCTGGACCGCCTGGTCCTCAAGCTGCCCGTGATCGGCAAGATCATGCACGAGGCCGCGCTGGC
GCGGTTCTCGCGCACGCTGGCGGTGACCTTCGCGGCCGGCGTGCCGCTGGTCGAAGCGCTGGAAACCGTGGCCGGCGCCA
CCGGCAACACCGTGTACGAACATGCGGTCAAGCGCATCCGCGACGACGTGGCCGTGGGTTACCAGGTCAACGTGGCGATG
AAGCAGACGCAGCTGTTCCCGCACATGGTCGTGCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGTT
GTACAAGGTGGCCGAGTTCTACGAGATGGAAGTCAACAACGCGGTCGACGCGCTCGCCAGCCTGCTGGAGCCGCTGATCG
TGGTGATGCTGGGCGTGATCGTGGGCAGCATGGTGGTCGCCATGTACCTGCCGATCTTCAAGCTCGCCGCCGTCGTCTGA
ATGCCGACCTTCATCTGGGTGGGCAACGACAAGCGCGGCATGAAGATGAAGGGCGAGCAGCAGGCCAAGACGGCCAACGC
GCTGCGCGCCGAACTGCGCAAGCAGGGCATCACGCCCACCGTGGTCAAGCCCAAGCCGAAGGACATCTTCGGCGGCGCCG
GCAAGCGCATCACGCCGAAGGACATCGCGGTGTTCAGCCGCCAGATCGCGACCATGCTCAAGTCGGGCGTGCCGATCGTG
ACGTCGATGGAAATCATCGCGGGCGGCCAGAAGAACCCGAAGATGCGCGACCTGGTCAACACGATCCGGACCGACATCGA
AAGCGGTTCGTCGCTGTCCGAATCGCTCACCAAGCATCCGGTGCAGTTCGACGAGCTCTATCGCAACCTGGTCAAGGCGG
GCGAATCGGCGGGCGTGCTCGACACGGTGCTCGACACCGTGGCGACGTACAAGGAAAACATCGAAACGCTGAAGGGCAAG
ATCAAGAAGGCGATGTTCTACCCCGCGATGGTCGTCGCGGTCGCCCTGCTCGTCAGCGCCATCCTGCTCGTGTTCGTGGT
GCCGCAGTTCGAAGACGTCTTCAAGAACTTCGGCGCCGAGCTGCCGGCCTTCACCCAGATGGTGATCAACCTCAGCAAGT
TCATGGTCAAGTGGTGGTGGGCGATCGGCGGCTTCGTGGCCGCGATCGTCGTCGGCTTCATCATGGCGAAGAAGCGCTCG
CCCGCCGTGCAGCACTTCCTGGACCGCCTGGTCCTCAAGCTGCCCGTGATCGGCAAGATCATGCACGAGGCCGCGCTGGC
GCGGTTCTCGCGCACGCTGGCGGTGACCTTCGCGGCCGGCGTGCCGCTGGTCGAAGCGCTGGAAACCGTGGCCGGCGCCA
CCGGCAACACCGTGTACGAACATGCGGTCAAGCGCATCCGCGACGACGTGGCCGTGGGTTACCAGGTCAACGTGGCGATG
AAGCAGACGCAGCTGTTCCCGCACATGGTCGTGCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGTT
GTACAAGGTGGCCGAGTTCTACGAGATGGAAGTCAACAACGCGGTCGACGCGCTCGCCAGCCTGCTGGAGCCGCTGATCG
TGGTGATGCTGGGCGTGATCGTGGGCAGCATGGTGGTCGCCATGTACCTGCCGATCTTCAAGCTCGCCGCCGTCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
56.927 |
99.499 |
0.566 |
| pilC | Pseudomonas stutzeri DSM 10701 |
54.912 |
99.499 |
0.546 |
| pilC | Acinetobacter baumannii D1279779 |
53 |
100 |
0.531 |
| pilC | Acinetobacter baylyi ADP1 |
52 |
100 |
0.521 |
| pilG | Neisseria gonorrhoeae MS11 |
44 |
100 |
0.441 |
| pilG | Neisseria meningitidis 44/76-A |
43.5 |
100 |
0.436 |
| pilC | Vibrio campbellii strain DS40M4 |
42 |
100 |
0.421 |
| pilC | Vibrio cholerae strain A1552 |
41.604 |
100 |
0.416 |
| pilC | Thermus thermophilus HB27 |
37.381 |
100 |
0.393 |