Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q3F87_RS02335 Genome accession   NZ_CP130328
Coordinates   314669..315898 (-) Length   409 a.a.
NCBI ID   WP_004787210.1    Uniprot ID   N9P8Z0
Organism   Acinetobacter variabilis strain TB2-2B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 309669..320898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3F87_RS02310 (Q3F87_02310) - 310985..311308 (+) 324 WP_004787221.1 pyrimidine/purine nucleoside phosphorylase -
  Q3F87_RS02315 (Q3F87_02315) rlmB 311451..312200 (+) 750 WP_005233526.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3F87_RS02320 (Q3F87_02320) - 312246..313163 (+) 918 WP_180033702.1 DMT family transporter -
  Q3F87_RS02325 (Q3F87_02325) coaE 313202..313807 (-) 606 WP_302700318.1 dephospho-CoA kinase -
  Q3F87_RS02330 (Q3F87_02330) pilD 313809..314669 (-) 861 WP_302700320.1 A24 family peptidase Machinery gene
  Q3F87_RS02335 (Q3F87_02335) pilC 314669..315898 (-) 1230 WP_004787210.1 type II secretion system F family protein Machinery gene
  Q3F87_RS02340 (Q3F87_02340) pilB 315929..317638 (-) 1710 WP_302700322.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q3F87_RS02345 (Q3F87_02345) tpiA 317917..318708 (+) 792 WP_302700324.1 triose-phosphate isomerase -
  Q3F87_RS02350 (Q3F87_02350) secG 318722..319051 (+) 330 WP_302700326.1 preprotein translocase subunit SecG -
  Q3F87_RS02380 (Q3F87_02380) rimP 320014..320538 (+) 525 WP_166136388.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44858.27 Da        Isoelectric Point: 9.7923

>NTDB_id=857873 Q3F87_RS02335 WP_004787210.1 314669..315898(-) (pilC) [Acinetobacter variabilis strain TB2-2B]
MAAVKKGQMTPIFSYEGVDRKGAKIKGELPARNMALAKVNLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDLLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVLKIKEDV
ATGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=857873 Q3F87_RS02335 WP_004787210.1 314669..315898(-) (pilC) [Acinetobacter variabilis strain TB2-2B]
ATGGCAGCAGTAAAAAAAGGCCAGATGACACCGATCTTCAGTTATGAAGGGGTTGACCGCAAAGGCGCAAAGATCAAGGG
GGAATTGCCGGCACGAAATATGGCCTTGGCAAAAGTGAACTTGCGCAAACAAGGCATTACGATCAAAACCATCCGGGAAA
AGAAAAAAAATATTCTCGAAGGCTTGATGAAGAAAAAAGTTTCCACCTTGGATATCACCATCTTCACCCGTCAGTTAGCC
ACCATGATGAAAGCGGGGGTGCCTTTAGTACAAGGCTTTGAAATCGTTGCAGAAGGTTTAGAAAATCCATCCATGCGCGA
GGTTGTACTGGGAATCAAAGGTGAAGTTGAAGGGGGGAATACTTTTGCCGGAGCCTTACGAAAATACCCACAATATTTCG
ATAATCTATTCTGCTCTTTGGTCGAATCTGGCGAACAATCTGGTGCTCTGGAAACCATGCTGGATCGTGTCGCGATTTAC
AAAGAAAAAAGTGAGTTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCCACAGTAATTGTAGTAGCTGTGAT
CGTCACAATTATCCTGATGGTGAAAGTAGTTCCTGTATTCCAGGACTTATTCTCTTCATTCGGTGCAGACTTACCTGCAT
TTACTAAAATGGTAGTCAATATGTCCGAATGGATGCAAAAATATTGGTTCCTTTTGATTATTGGAATTGGCGTAGTGATT
ACTGCTTTCCTTGAAGCGAAAAAGCGTAGCAAAAAATTCCGTGATTTACTGGATAAGGCCGCGCTCAAAGCACCCATCTT
TGGTGATCTGGTCTATAAAGCGATCATTGCCCGTTATAGCCGCACTCTCGCTACCACTTTTGCTGCCGGTGTGCCATTAA
TTGATGCGCTTGAATCGACTGCTGGTGCAACCAATAACGTGGTCTATGAGGAGGCGGTATTAAAAATCAAGGAAGATGTT
GCGACAGGTCAACAGCTTCAATTTGCCATGCGTGTCACCGATAAATTCCCCTCTATGGCCGTACAAATGGTTGCAATTGG
TGAAGAATCAGGTGCATTGGATGCCATGCTGGATAAAGTCGCAACCCATTATGAAAATGAAGTCGACAATGCGGTTGATG
GTTTAACTTCCATGATGGAGCCCTTGATTATGGCAATTCTTGGTGTCCTTGTTGGTGGCCTTGTTATCGCAATGTACCTT
CCAATTTTCCAAATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9P8Z0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

83.538

99.511

0.831
  pilC Pseudomonas stutzeri DSM 10701

62.563

97.311

0.609
  pilC Legionella pneumophila strain ERS1305867

53.401

97.066

0.518
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

42.402

99.756

0.423
  pilC Vibrio campbellii strain DS40M4

41.709

97.311

0.406