NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	Q3F87_RS02330	Genome accession	NZ_CP130328
Coordinates	313809..314669 (-)	Length	286 a.a.
NCBI ID	WP_302700320.1	Uniprot ID	-
Organism	Acinetobacter variabilis strain TB2-2B
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 308809..319669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q3F87_RS02305 (Q3F87_02305)	recN	308886..310547 (-)	1662	WP_302700316.1	DNA repair protein RecN	-
Q3F87_RS02310 (Q3F87_02310)	-	310985..311308 (+)	324	WP_004787221.1	pyrimidine/purine nucleoside phosphorylase	-
Q3F87_RS02315 (Q3F87_02315)	rlmB	311451..312200 (+)	750	WP_005233526.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
Q3F87_RS02320 (Q3F87_02320)	-	312246..313163 (+)	918	WP_180033702.1	DMT family transporter	-
Q3F87_RS02325 (Q3F87_02325)	coaE	313202..313807 (-)	606	WP_302700318.1	dephospho-CoA kinase	-
Q3F87_RS02330 (Q3F87_02330)	pilD	313809..314669 (-)	861	WP_302700320.1	A24 family peptidase	Machinery gene
Q3F87_RS02335 (Q3F87_02335)	pilC	314669..315898 (-)	1230	WP_004787210.1	type II secretion system F family protein	Machinery gene
Q3F87_RS02340 (Q3F87_02340)	pilB	315929..317638 (-)	1710	WP_302700322.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q3F87_RS02345 (Q3F87_02345)	tpiA	317917..318708 (+)	792	WP_302700324.1	triose-phosphate isomerase	-
Q3F87_RS02350 (Q3F87_02350)	secG	318722..319051 (+)	330	WP_302700326.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32112.35 Da Isoelectric Point: 7.7903

                                >NTDB_id=857872 Q3F87_RS02330 WP_302700320.1 313809..314669(-) (pilD) [Acinetobacter variabilis strain TB2-2B]

MQDFILYFSQNPTSLYLAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP

IRWYQNVPVISWILLRGKCGNCQNPISIRYPFIELLTAACALIVVAVFGPTIQMLFGLVFTYVLIALTFIDFDTQLLPDR

YTLPLAALGLGINSYAIYTTPDSAIWGYIIGFLCLWVVYYLFKLVTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=857872 Q3F87_RS02330 WP_302700320.1 313809..314669(-) (pilD) [Acinetobacter variabilis strain TB2-2B]

ATGCAAGATTTTATTTTATATTTCAGTCAAAACCCAACTTCGCTTTATCTCGCAGTTGGGCTTTTTAGTCTCTGTATTGG

TAGCTTTTTAAACGTTGTCATTTATCGCACCCCTAAAATGATGGAACAGGAATGGCGTACAGATTGCCAACTGTTTTTGC

ATCCAGATCAGCCCATTATTGATGAAAGCAAAATTACTTTAAGCAAGCCAGCTTCAACCTGCCCGAAATGTCAGACTCCT

ATTCGCTGGTATCAAAATGTTCCGGTGATTAGTTGGATTTTATTACGTGGTAAATGTGGTAACTGTCAGAATCCTATCAG

TATCCGCTATCCATTTATTGAGCTTTTGACAGCTGCTTGTGCACTGATAGTGGTGGCAGTATTCGGGCCTACTATACAGA

TGCTGTTTGGTCTGGTTTTTACCTATGTCCTGATTGCCCTCACCTTTATTGATTTCGATACCCAGTTATTACCCGATCGC

TATACCCTGCCGCTGGCTGCACTCGGCCTGGGCATTAATAGTTATGCGATTTATACTACCCCTGATTCTGCCATCTGGGG

CTATATCATTGGCTTCTTATGCTTGTGGGTGGTGTACTATCTGTTTAAGCTGGTGACCGGCAAGGAAGGTATGGGCTATG

GAGATTTCAAATTACTAGCTGCCTTAGGTGCCTGGATGGGGCCTATGCTCCTACCACTCATTGTATTATTGTCATCATTG

GTGGGCGCGATTATTGGGATTATCCTGCTTAAAGTCCGTAAAGAAAATCAGCCCTTTGCCTTTGGCCCTTATATTGCCAT

TGCCGGCTGGATTGCCTTTTTATGGGGTGAGCAGATCATGAAAATCTATTTAGGTCAGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	80.702	99.65	0.804
pilD	Acinetobacter nosocomialis M2	80.351	99.65	0.801
pilD	Vibrio cholerae strain A1552	54.682	93.357	0.51
pilD	Vibrio campbellii strain DS40M4	54.135	93.007	0.503
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437

Detailed information NTG0857872