Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   STYK_RS07685 Genome accession   NZ_AP024523
Coordinates   1494248..1494718 (-) Length   156 a.a.
NCBI ID   WP_000609606.1    Uniprot ID   A0A0U0CT68
Organism   Streptococcus toyakuensis strain TP1632     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1489248..1499718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS07655 (STYK_14580) - 1490291..1490587 (-) 297 WP_247928026.1 GIY-YIG nuclease family protein -
  STYK_RS07660 (STYK_14590) - 1490577..1491326 (-) 750 WP_261804815.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  STYK_RS07665 (STYK_14600) - 1491379..1491741 (-) 363 WP_000689605.1 S1 RNA-binding domain-containing protein -
  STYK_RS07670 (STYK_14610) - 1491743..1493143 (-) 1401 WP_045612058.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  STYK_RS07675 (STYK_14620) - 1493223..1493726 (-) 504 WP_045612060.1 GNAT family N-acetyltransferase -
  STYK_RS07680 (STYK_14630) rpsR 1493977..1494216 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  STYK_RS07685 (STYK_14640) ssbA 1494248..1494718 (-) 471 WP_000609606.1 single-stranded DNA-binding protein SsbA Machinery gene
  STYK_RS07690 (STYK_14650) rpsF 1494730..1495020 (-) 291 WP_001151780.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17352.20 Da        Isoelectric Point: 4.9164

>NTDB_id=85754 STYK_RS07685 WP_000609606.1 1494248..1494718(-) (ssbA) [Streptococcus toyakuensis strain TP1632]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=85754 STYK_RS07685 WP_000609606.1 1494248..1494718(-) (ssbA) [Streptococcus toyakuensis strain TP1632]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTTGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCATACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U0CT68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.603
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50.427

75

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378

Multiple sequence alignment