Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   STYK_RS01075 Genome accession   NZ_AP024523
Coordinates   212717..213130 (+) Length   137 a.a.
NCBI ID   WP_261805083.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 207717..218130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS01035 (STYK_01830) - 207770..208828 (+) 1059 WP_261805079.1 zinc-dependent alcohol dehydrogenase family protein -
  STYK_RS01040 (STYK_01840) - 208978..209343 (+) 366 WP_000286405.1 DUF1033 family protein -
  STYK_RS01045 (STYK_01850) comGA/cglA/cilD 209420..210361 (+) 942 WP_261805080.1 competence type IV pilus ATPase ComGA Machinery gene
  STYK_RS01050 (STYK_01860) comGB/cglB 210309..211325 (+) 1017 WP_261805081.1 competence type IV pilus assembly protein ComGB Machinery gene
  STYK_RS01055 (STYK_01870) comGC/cglC 211327..211653 (+) 327 WP_004257466.1 competence type IV pilus major pilin ComGC Machinery gene
  STYK_RS01060 (STYK_01880) comGD/cglD 211646..212050 (+) 405 WP_261081317.1 competence type IV pilus minor pilin ComGD Machinery gene
  STYK_RS01065 (STYK_01890) comGE/cglE 212013..212315 (+) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  STYK_RS01070 (STYK_01900) comGF/cglF 212278..212739 (+) 462 WP_261805082.1 competence type IV pilus minor pilin ComGF Machinery gene
  STYK_RS01075 (STYK_01910) comGG/cglG 212717..213130 (+) 414 WP_261805083.1 competence type IV pilus minor pilin ComGG Machinery gene
  STYK_RS01080 (STYK_01920) - 213163..213750 (+) 588 WP_261805084.1 class I SAM-dependent methyltransferase -
  STYK_RS01085 (STYK_01930) comYH 213811..214764 (+) 954 WP_049515760.1 class I SAM-dependent methyltransferase Machinery gene
  STYK_RS01090 (STYK_01940) - 214815..216005 (+) 1191 WP_033684718.1 acetate kinase -
  STYK_RS01095 (STYK_01950) rnpA 216155..216526 (+) 372 WP_033679593.1 ribonuclease P protein component -
  STYK_RS01100 (STYK_01960) - 216501..217325 (+) 825 WP_261805085.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15830.32 Da        Isoelectric Point: 10.1699

>NTDB_id=85715 STYK_RS01075 WP_261805083.1 212717..213130(+) (comGG/cglG) [Streptococcus toyakuensis strain TP1632]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQIFNLGQVSYQNKK
TGLVTMVRTPKSQYEFLFPSVKIKEEKTDKKEDVATDSSEKAEKKKSEEKVEKKDHS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=85715 STYK_RS01075 WP_261805083.1 212717..213130(+) (comGG/cglG) [Streptococcus toyakuensis strain TP1632]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGAGTTCTCCTTTATGCAGTAACCATGGCAGCCATTTTTAGCCTTTTGTTACA
ATTTTACTTGAACAGACAAGTCGCCCACTATCAAGACTACGCTTTAAATAAAGAAAAGTTGGTTGCTTTTGCCATGGCTA
AGCGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAGCAGATCTTTAATCTAGGTCAGGTAAGCTATCAAAATAAGAAA
ACTGGCTTGGTGACAATGGTTCGTACGCCTAAGAGTCAATATGAGTTCCTATTTCCTTCAGTCAAAATCAAAGAAGAGAA
AACGGATAAAAAGGAAGATGTAGCGACTGATTCAAGCGAAAAAGCGGAGAAGAAAAAATCAGAAGAGAAGGTCGAAAAGA
AAGATCATTCTTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

90.984

89.051

0.81

  comGG/cglG Streptococcus pneumoniae Rx1

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae D39

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae R6

94.017

85.401

0.803

  comGG/cglG Streptococcus pneumoniae TIGR4

94.017

85.401

0.803

  comGG/cglG Streptococcus mitis SK321

86.885

89.051

0.774

  comYG Streptococcus mutans UA140

39.552

97.81

0.387

  comYG Streptococcus mutans UA159

39.552

97.81

0.387


Multiple sequence alignment