Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | STYK_RS01085 | Genome accession | NZ_AP024523 |
| Coordinates | 213811..214764 (+) | Length | 317 a.a. |
| NCBI ID | WP_049515760.1 | Uniprot ID | - |
| Organism | Streptococcus toyakuensis strain TP1632 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 208811..219764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STYK_RS01040 (STYK_01840) | - | 208978..209343 (+) | 366 | WP_000286405.1 | DUF1033 family protein | - |
| STYK_RS01045 (STYK_01850) | comGA/cglA/cilD | 209420..210361 (+) | 942 | WP_261805080.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| STYK_RS01050 (STYK_01860) | comGB/cglB | 210309..211325 (+) | 1017 | WP_261805081.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| STYK_RS01055 (STYK_01870) | comGC/cglC | 211327..211653 (+) | 327 | WP_004257466.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| STYK_RS01060 (STYK_01880) | comGD/cglD | 211646..212050 (+) | 405 | WP_261081317.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| STYK_RS01065 (STYK_01890) | comGE/cglE | 212013..212315 (+) | 303 | WP_000413380.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| STYK_RS01070 (STYK_01900) | comGF/cglF | 212278..212739 (+) | 462 | WP_261805082.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| STYK_RS01075 (STYK_01910) | comGG/cglG | 212717..213130 (+) | 414 | WP_261805083.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| STYK_RS01080 (STYK_01920) | - | 213163..213750 (+) | 588 | WP_261805084.1 | class I SAM-dependent methyltransferase | - |
| STYK_RS01085 (STYK_01930) | comYH | 213811..214764 (+) | 954 | WP_049515760.1 | class I SAM-dependent methyltransferase | Machinery gene |
| STYK_RS01090 (STYK_01940) | - | 214815..216005 (+) | 1191 | WP_033684718.1 | acetate kinase | - |
| STYK_RS01095 (STYK_01950) | rnpA | 216155..216526 (+) | 372 | WP_033679593.1 | ribonuclease P protein component | - |
| STYK_RS01100 (STYK_01960) | - | 216501..217325 (+) | 825 | WP_261805085.1 | membrane protein insertase YidC | - |
| STYK_RS01105 (STYK_01970) | jag | 217343..218332 (+) | 990 | WP_261805086.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| STYK_RS01110 | - | 218375..219734 (-) | 1360 | Protein_197 | transposase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35666.77 Da Isoelectric Point: 4.2054
>NTDB_id=85716 STYK_RS01085 WP_049515760.1 213811..214764(+) (comYH) [Streptococcus toyakuensis strain TP1632]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQENTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLTAMISLPENLFANAKQSKTIFILQKKNEITVDPFVYPLASLQDASVLMKFKENFQKWTQGTEI
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQENTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLTAMISLPENLFANAKQSKTIFILQKKNEITVDPFVYPLASLQDASVLMKFKENFQKWTQGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=85716 STYK_RS01085 WP_049515760.1 213811..214764(+) (comYH) [Streptococcus toyakuensis strain TP1632]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAGAGCAGGTCAAGGAAAACAATC
AGGCCCTTAAACGCTTAGCGCTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAGCCCCTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAAGAGGAGATTACGATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCAAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCTGTTCGTCCACAAATGCTCAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAAAATACCTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAATCAGATGGCTACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTGTTGAAAGGTTGGTTGAAAGAGGAGGCAAGTCTGACTGCCATGATTAGTTTGCCTGAAAATCTCTTTGCCAA
TGCCAAACAATCTAAGACCATTTTTATCCTACAGAAGAAAAATGAAATAACAGTAGATCCTTTTGTTTATCCTCTTGCTA
GCTTACAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAGAGCAGGTCAAGGAAAACAATC
AGGCCCTTAAACGCTTAGCGCTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAGCCCCTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAAGAGGAGATTACGATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCAAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCTGTTCGTCCACAAATGCTCAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAAAATACCTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAATCAGATGGCTACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTGTTGAAAGGTTGGTTGAAAGAGGAGGCAAGTCTGACTGCCATGATTAGTTTGCCTGAAAATCTCTTTGCCAA
TGCCAAACAATCTAAGACCATTTTTATCCTACAGAAGAAAAATGAAATAACAGTAGATCCTTTTGTTTATCCTCTTGCTA
GCTTACAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
54.313 |
98.738 |
0.536 |
| comYH | Streptococcus mutans UA159 |
53.994 |
98.738 |
0.533 |