Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QZL45_RS01730 Genome accession   NZ_CP129944
Coordinates   359009..360235 (-) Length   408 a.a.
NCBI ID   WP_222763978.1    Uniprot ID   -
Organism   Vibrio fluvialis strain I7A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354009..365235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS01705 parC 354128..356401 (+) 2274 WP_047459105.1 DNA topoisomerase IV subunit A -
  QZL45_RS01710 yacG 356452..356649 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  QZL45_RS01715 zapD 356704..357444 (-) 741 WP_222763972.1 cell division protein ZapD -
  QZL45_RS01720 coaE 357477..358085 (-) 609 WP_222763974.1 dephospho-CoA kinase -
  QZL45_RS01725 pilD 358088..358957 (-) 870 WP_222763976.1 A24 family peptidase Machinery gene
  QZL45_RS01730 pilC 359009..360235 (-) 1227 WP_222763978.1 type II secretion system F family protein Machinery gene
  QZL45_RS01735 pilB 360271..361957 (-) 1687 Protein_327 type IV-A pilus assembly ATPase PilB -
  QZL45_RS01740 pilA 361967..362386 (-) 420 WP_222763982.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QZL45_RS01745 nadC 362618..363505 (-) 888 WP_308413212.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QZL45_RS01750 ampD 363658..364209 (+) 552 WP_055452472.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QZL45_RS01755 fldB 364214..364735 (-) 522 WP_020430452.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44642.86 Da        Isoelectric Point: 10.4880

>NTDB_id=856602 QZL45_RS01730 WP_222763978.1 359009..360235(-) (pilC) [Vibrio fluvialis strain I7A]
MKPTKGPELKNYRWKGVNSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNQVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAGAFIASLGLVFG
IKAARKKSFVVRLKTSQLSLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=856602 QZL45_RS01730 WP_222763978.1 359009..360235(-) (pilC) [Vibrio fluvialis strain I7A]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGCAAGAAAGTCGCGGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCAGTTCTGACTCGTCTCACCAATCAGGTCAAAACTAAAGACATCACCATCCTCACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTGCCGATTGTGCAGGCACTTAAATTGGTCGGCGATAATCATCGTAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGTACTGCTAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGCGAGCAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAGGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTATCGCATGGGGTACAAGCCTACAGTGCGGGGGCGTTCATCGCGTCATTGGGCTTGGTGTTTGGC
ATCAAAGCAGCACGGAAAAAATCCTTCGTCGTCCGTCTTAAAACCAGCCAGCTCAGCCTGCGTTTTCCAATCATTGGCGG
TGTGCTTGCCAAAGCCGCAATTGCTAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAAACCACCGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCAGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

86.765

100

0.868
  pilC Vibrio campbellii strain DS40M4

72.861

100

0.73
  pilC Acinetobacter baumannii D1279779

41.667

100

0.417
  pilC Legionella pneumophila strain ERS1305867

41.353

97.794

0.404
  pilC Acinetobacter baylyi ADP1

41.31

97.304

0.402
  pilC Pseudomonas stutzeri DSM 10701

40.152

97.059

0.39
  pilG Neisseria gonorrhoeae MS11

39.599

97.794

0.387
  pilG Neisseria meningitidis 44/76-A

39.098

97.794

0.382