Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QZL45_RS01725 Genome accession   NZ_CP129944
Coordinates   358088..358957 (-) Length   289 a.a.
NCBI ID   WP_222763976.1    Uniprot ID   -
Organism   Vibrio fluvialis strain I7A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353088..363957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS01705 parC 354128..356401 (+) 2274 WP_047459105.1 DNA topoisomerase IV subunit A -
  QZL45_RS01710 yacG 356452..356649 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  QZL45_RS01715 zapD 356704..357444 (-) 741 WP_222763972.1 cell division protein ZapD -
  QZL45_RS01720 coaE 357477..358085 (-) 609 WP_222763974.1 dephospho-CoA kinase -
  QZL45_RS01725 pilD 358088..358957 (-) 870 WP_222763976.1 A24 family peptidase Machinery gene
  QZL45_RS01730 pilC 359009..360235 (-) 1227 WP_222763978.1 type II secretion system F family protein Machinery gene
  QZL45_RS01735 pilB 360271..361957 (-) 1687 Protein_327 type IV-A pilus assembly ATPase PilB -
  QZL45_RS01740 pilA 361967..362386 (-) 420 WP_222763982.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QZL45_RS01745 nadC 362618..363505 (-) 888 WP_308413212.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32264.31 Da        Isoelectric Point: 6.4655

>NTDB_id=856601 QZL45_RS01725 WP_222763976.1 358088..358957(-) (pilD) [Vibrio fluvialis strain I7A]
MDIFNFYPWLFPTLATVLGLIIGSFLNVVIYRLPKIMEREWRQECAESFPEYHIEPPQGILTLSTPRSTCPHCDTPIRVI
DNIPVLSWLLLRGKCSNCQGSISARYPLIELLTASCSLLIALQFGFSWFAVAMLFFTYTLIAATFIDFDTMLLPDQLTLP
LLWAGIALALAGISPISLQDAVIGAIAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLLIIILMSSLVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSLLFGHDIAGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=856601 QZL45_RS01725 WP_222763976.1 358088..358957(-) (pilD) [Vibrio fluvialis strain I7A]
ATGGACATTTTTAATTTTTACCCCTGGCTGTTTCCTACGCTGGCGACAGTGCTGGGGTTAATTATCGGCAGTTTCCTCAA
TGTGGTGATTTATCGCCTGCCGAAAATCATGGAGCGCGAGTGGCGTCAGGAGTGTGCGGAGTCCTTTCCCGAGTATCATA
TTGAACCGCCTCAGGGCATTTTAACGCTGAGCACGCCACGTTCCACCTGCCCGCATTGCGATACTCCGATCCGGGTTATC
GACAACATTCCGGTACTGAGCTGGCTGTTGCTGCGTGGTAAATGCTCGAATTGTCAGGGCTCTATCAGCGCGCGTTATCC
ACTGATTGAACTGCTGACGGCTTCATGCAGCCTCTTGATTGCGCTGCAATTTGGTTTTAGCTGGTTTGCCGTTGCCATGC
TGTTCTTTACCTATACGCTGATTGCGGCAACCTTCATTGATTTCGATACGATGCTGCTGCCGGATCAGCTTACTCTGCCC
CTACTCTGGGCTGGTATTGCACTGGCATTGGCGGGCATCAGCCCGATTTCGCTACAAGATGCGGTGATTGGTGCGATAGC
GGGTTATCTGTCGTTGTGGTCGGTGTACTGGCTGTTTAAGCTACTGACAGGCAAAGAAGGCATGGGCTATGGCGACTTTA
AGCTGTTAGCGGCTCTCGGTGCCTGGCTGGGATGGCAGCAACTACTGATCATCATTCTGATGTCATCTCTGGTTGGACTG
GTGTTCGGCCTCATTCAACTGCGTCTGCAAAAGCGCGGCATTGATAAAGCATTTCCCTTCGGGCCTTATCTGGCGATTGC
AGGCTGGTTATCCCTGCTGTTTGGTCATGACATTGCGGGTTGGTATTTTCATTCGGTATTAGGATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

78.125

99.654

0.779
  pilD Vibrio campbellii strain DS40M4

77.431

99.654

0.772
  pilD Acinetobacter baumannii D1279779

52.555

94.81

0.498
  pilD Acinetobacter nosocomialis M2

52.19

94.81

0.495
  pilD Neisseria gonorrhoeae MS11

50.558

93.08

0.471