Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QZL40_RS05320 Genome accession   NZ_CP129936
Coordinates   1118105..1118389 (+) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain I13A     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1113105..1123389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL40_RS05310 - 1115623..1115895 (+) 273 WP_005382341.1 HU family DNA-binding protein -
  QZL40_RS05315 ppiD 1116095..1117954 (+) 1860 WP_308390323.1 peptidylprolyl isomerase -
  QZL40_RS05320 comEA 1118105..1118389 (+) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  QZL40_RS05325 rrtA 1118480..1119031 (-) 552 WP_025540469.1 rhombosortase -
  QZL40_RS05330 - 1119035..1119649 (+) 615 WP_308390322.1 DTW domain-containing protein -
  QZL40_RS05335 - 1119656..1120990 (-) 1335 WP_041954079.1 anti-phage deoxyguanosine triphosphatase -
  QZL40_RS05340 yfbR 1121003..1121587 (-) 585 WP_005482513.1 5'-deoxynucleotidase -
  QZL40_RS05345 - 1121678..1122892 (-) 1215 WP_005456922.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=856474 QZL40_RS05320 WP_021449594.1 1118105..1118389(+) (comEA) [Vibrio parahaemolyticus strain I13A]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=856474 QZL40_RS05320 WP_021449594.1 1118105..1118389(+) (comEA) [Vibrio parahaemolyticus strain I13A]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362