Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QZL36_RS05340 Genome accession   NZ_CP129932
Coordinates   1129580..1129864 (+) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM18B     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1124580..1134864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL36_RS05330 - 1127098..1127370 (+) 273 WP_005382341.1 HU family DNA-binding protein -
  QZL36_RS05335 ppiD 1127570..1129429 (+) 1860 WP_005482527.1 peptidylprolyl isomerase -
  QZL36_RS05340 comEA 1129580..1129864 (+) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  QZL36_RS05345 rrtA 1129955..1130506 (-) 552 WP_005482515.1 rhombosortase -
  QZL36_RS05350 - 1130510..1131115 (+) 606 WP_322533601.1 DTW domain-containing protein -
  QZL36_RS05355 - 1131133..1132467 (-) 1335 WP_049873683.1 anti-phage deoxyguanosine triphosphatase -
  QZL36_RS05360 yfbR 1132480..1133064 (-) 585 WP_005482513.1 5'-deoxynucleotidase -
  QZL36_RS05365 - 1133155..1134369 (-) 1215 WP_005456922.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=856429 QZL36_RS05340 WP_021449594.1 1129580..1129864(+) (comEA) [Vibrio parahaemolyticus isolate BM18B]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=856429 QZL36_RS05340 WP_021449594.1 1129580..1129864(+) (comEA) [Vibrio parahaemolyticus isolate BM18B]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTGAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362