Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QZL36_RS00945 Genome accession   NZ_CP129932
Coordinates   196092..197204 (+) Length   370 a.a.
NCBI ID   WP_308385341.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM18B     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 191092..202204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL36_RS00925 rsmB 192012..193295 (-) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QZL36_RS00930 fmt 193376..194323 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  QZL36_RS00935 def 194357..194875 (-) 519 WP_308385342.1 peptide deformylase -
  QZL36_RS00940 - 195014..196108 (+) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  QZL36_RS00945 dprA 196092..197204 (+) 1113 WP_308385341.1 DNA-processing protein DprA Machinery gene
  QZL36_RS00950 - 197207..197686 (+) 480 WP_005461440.1 DUF494 family protein -
  QZL36_RS00955 - 197765..198334 (+) 570 WP_021449061.1 type I DNA topoisomerase -
  QZL36_RS00960 - 198404..199531 (-) 1128 WP_308385340.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QZL36_RS00965 purE 199536..200021 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QZL36_RS00970 - 200221..200778 (+) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  QZL36_RS00975 hemF 200826..201743 (+) 918 WP_025578082.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39840.47 Da        Isoelectric Point: 6.7688

>NTDB_id=856422 QZL36_RS00945 WP_308385341.1 196092..197204(+) (dprA) [Vibrio parahaemolyticus isolate BM18B]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTKNGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSANQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=856422 QZL36_RS00945 WP_308385341.1 196092..197204(+) (dprA) [Vibrio parahaemolyticus isolate BM18B]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCATTGCAGGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAAAAAATGGCGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACTGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCGTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGCTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Haemophilus influenzae Rd KW20

45.858

91.351

0.419
  dprA Legionella pneumophila strain ERS1305867

47.239

88.108

0.416
  dprA Neisseria meningitidis strain C311

37.436

100

0.395
  dprA Neisseria meningitidis MC58

37.436

100

0.395
  dprA Neisseria gonorrhoeae MS11

35.309

100

0.37
  dprA Neisseria gonorrhoeae strain FA1090

35.052

100

0.368
  dprA Thermus thermophilus HB27

37.64

96.216

0.362