Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QZL34_RS11775 Genome accession   NZ_CP129930
Coordinates   2508015..2508299 (-) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2507373..2517342 2508015..2508299 within 0


Gene organization within MGE regions


Location: 2507373..2517342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS11770 rrtA 2507373..2507924 (+) 552 WP_005495980.1 rhombosortase -
  QZL34_RS11775 comEA 2508015..2508299 (-) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  QZL34_RS11780 ppiD 2508450..2510309 (-) 1860 WP_005482527.1 peptidylprolyl isomerase -
  QZL34_RS11785 - 2510509..2510781 (-) 273 WP_005382341.1 HU family DNA-binding protein -
  QZL34_RS11790 lon 2510974..2513325 (-) 2352 WP_131169080.1 endopeptidase La -
  QZL34_RS11795 clpX 2513457..2514737 (-) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX -
  QZL34_RS11800 clpP 2514809..2515435 (-) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  QZL34_RS11805 tig 2515541..2516845 (-) 1305 WP_005460612.1 trigger factor -
  QZL34_RS11810 - 2517139..2517324 (-) 186 WP_005482581.1 hypothetical protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=856388 QZL34_RS11775 WP_021449594.1 2508015..2508299(-) (comEA) [Vibrio parahaemolyticus isolate BM24A]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=856388 QZL34_RS11775 WP_021449594.1 2508015..2508299(-) (comEA) [Vibrio parahaemolyticus isolate BM24A]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362