Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QYQ99_RS08065 Genome accession   NZ_CP129672
Coordinates   1755846..1757063 (+) Length   405 a.a.
NCBI ID   WP_302092188.1    Uniprot ID   -
Organism   Comamonas testosteroni strain MWF001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1750846..1762063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ99_RS08040 (QYQ99_08040) rpmA 1751944..1752201 (-) 258 WP_003058534.1 50S ribosomal protein L27 -
  QYQ99_RS08045 (QYQ99_08045) rplU 1752218..1752529 (-) 312 WP_003058536.1 50S ribosomal protein L21 -
  QYQ99_RS08050 (QYQ99_08050) - 1752895..1753824 (+) 930 WP_302092186.1 polyprenyl synthetase family protein -
  QYQ99_RS08060 (QYQ99_08060) pilB 1754079..1755821 (+) 1743 WP_302092187.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QYQ99_RS08065 (QYQ99_08065) pilC 1755846..1757063 (+) 1218 WP_302092188.1 type II secretion system F family protein Machinery gene
  QYQ99_RS08070 (QYQ99_08070) - 1757063..1757932 (+) 870 WP_302092189.1 A24 family peptidase -
  QYQ99_RS08075 (QYQ99_08075) coaE 1757936..1758562 (+) 627 WP_302092190.1 dephospho-CoA kinase -
  QYQ99_RS08080 (QYQ99_08080) zapD 1758650..1759405 (+) 756 WP_302092191.1 cell division protein ZapD -
  QYQ99_RS08085 (QYQ99_08085) - 1759505..1759714 (+) 210 WP_034357520.1 DNA gyrase inhibitor YacG -
  QYQ99_RS08090 (QYQ99_08090) - 1759727..1760197 (-) 471 WP_302092192.1 NUDIX domain-containing protein -
  QYQ99_RS08095 (QYQ99_08095) - 1760210..1761145 (-) 936 WP_302093136.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44596.41 Da        Isoelectric Point: 9.6163

>NTDB_id=854848 QYQ99_RS08065 WP_302092188.1 1755846..1757063(+) (pilC) [Comamonas testosteroni strain MWF001]
MASAASKGIKEFLFEWEGKDRNGKIVRGETRAGGENQIQAMLRRQGVTPSKIKKRRTRGGKKIKPKDIALFTRQLATMMK
AGVPLLQSFDIVGRGNTNPNVTKLLNDIRSDVETGTSLSAAFRKFPLYFNNLYCNLVEAGEAAGILESLLDRLATYMEKT
EAIKSKIKSALMYPISVMIVAFVVVTVIMIFVIPAFKEVFTSFGADLPAPTLLVMAISEYFVQYWWLIFGVLGGGLYFFM
QAWKRNERVQQFMDRAILKLPIFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNYLYRNATDRIQSEVSTGT
SLTVAMANANIFPSMVLQMCAIGEESGAIDHMLGKAADFYESEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
MGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=854848 QYQ99_RS08065 WP_302092188.1 1755846..1757063(+) (pilC) [Comamonas testosteroni strain MWF001]
ATGGCAAGCGCAGCGTCCAAGGGAATCAAGGAATTTCTCTTCGAGTGGGAAGGTAAGGACCGCAACGGCAAGATCGTTCG
CGGCGAGACTCGTGCCGGTGGAGAAAATCAGATCCAGGCCATGCTGCGCCGCCAGGGCGTGACTCCGTCCAAGATCAAGA
AGCGCAGGACCCGCGGCGGCAAGAAGATCAAGCCCAAGGACATTGCGCTGTTCACGCGCCAGCTGGCCACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGTCTTTCGACATCGTGGGCCGAGGCAACACCAATCCCAATGTCACCAAGCTGCTCAACGA
CATCCGCTCAGACGTGGAAACCGGCACCTCGCTGAGCGCGGCCTTTCGCAAGTTTCCGCTCTATTTCAACAACCTCTACT
GCAACCTGGTGGAGGCCGGCGAGGCCGCAGGTATTCTGGAATCGCTGCTGGACCGTCTTGCCACCTACATGGAAAAGACG
GAAGCCATCAAGTCCAAGATCAAGTCCGCGCTGATGTATCCGATATCGGTGATGATCGTGGCCTTTGTCGTGGTGACCGT
GATCATGATCTTCGTGATCCCGGCCTTCAAGGAGGTCTTCACCTCCTTTGGCGCCGACCTGCCCGCGCCCACCTTGCTGG
TGATGGCAATCAGTGAGTATTTCGTGCAGTACTGGTGGCTGATCTTCGGCGTGCTGGGTGGCGGCCTCTATTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCGTGCAGCAGTTCATGGACCGCGCCATACTCAAGCTGCCTATCTTCGGCGTGCTGAT
TGAAAAGTCCTGCGTGGCCCGCTGGACGCGTACGCTGTCCACCATGTTTGCCGCCGGCGTGCCGCTGGTCGAGGCGCTGG
ACTCCGTGGGAGGCGCCTCGGGCAACTACCTCTACAGAAACGCCACCGACAGGATTCAGTCGGAAGTCTCCACAGGCACC
AGCCTCACGGTTGCCATGGCCAATGCCAATATCTTCCCTTCCATGGTGCTGCAGATGTGTGCCATCGGCGAGGAGTCGGG
CGCCATCGACCATATGCTGGGCAAGGCAGCCGATTTCTATGAGAGCGAAGTCGACGAAATGGTGGCGGGGCTGTCCAGCC
TGATGGAGCCCATCATCATCGTCTTCCTGGGCACCTTGATCGGCGGCATCGTGGTGTCCATGTATCTGCCTATCTTCAAG
ATGGGTCAAGTGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.753

0.541
  pilG Neisseria gonorrhoeae MS11

51.134

98.025

0.501
  pilG Neisseria meningitidis 44/76-A

50.882

98.025

0.499
  pilC Legionella pneumophila strain ERS1305867

51.01

97.778

0.499
  pilC Acinetobacter baylyi ADP1

50

98.272

0.491
  pilC Acinetobacter baumannii D1279779

48.615

98.025

0.477
  pilC Vibrio cholerae strain A1552

40.05

98.025

0.393
  pilC Vibrio campbellii strain DS40M4

38.035

98.025

0.373
  pilC Thermus thermophilus HB27

36.634

99.753

0.365