Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V2W30_RS13640 Genome accession   NZ_CP146022
Coordinates   2927643..2928248 (-) Length   201 a.a.
NCBI ID   WP_338703597.1    Uniprot ID   A0ACD5ANW5
Organism   Streptomyces sp. Q6     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2922643..2933248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS13625 (V2W30_13625) - 2924452..2925393 (+) 942 WP_338696462.1 hypothetical protein -
  V2W30_RS13630 (V2W30_13630) clpX 2925478..2926764 (-) 1287 WP_338696463.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V2W30_RS13635 (V2W30_13635) clpP 2926921..2927580 (-) 660 WP_338696464.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V2W30_RS13640 (V2W30_13640) clpP 2927643..2928248 (-) 606 WP_338703597.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V2W30_RS13645 (V2W30_13645) tig 2928520..2929902 (-) 1383 WP_338696466.1 trigger factor -
  V2W30_RS13660 (V2W30_13660) - 2930452..2931183 (-) 732 WP_338696468.1 GAF domain-containing protein -
  V2W30_RS13665 (V2W30_13665) - 2931234..2932013 (-) 780 WP_338696470.1 GAF and ANTAR domain-containing protein -
  V2W30_RS13670 (V2W30_13670) - 2932411..2932605 (-) 195 WP_306323068.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21166.96 Da        Isoelectric Point: 4.4663

>NTDB_id=854568 V2W30_RS13640 WP_338703597.1 2927643..2928248(-) (clpP) [Streptomyces sp. Q6]
MPSAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQMLLLAADPDKDIFLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIGMGMAASMGQFLLTGGSAGKRFALPNTDILMHQGSAGIGGTASDVKIQAEYLLRTKQRMARITAEHSGQTIE
TIIRDGDRDRWYTAEEAKEYGLIDEIITAATGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=854568 V2W30_RS13640 WP_338703597.1 2927643..2928248(-) (clpP) [Streptomyces sp. Q6]
ATGCCTTCCGCCGCCGGAGAGCCGTCCATCGGCGGTGGCCTCGGCGACCATGTCTACAACCGGCTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGATGCTGCTCCTGGCCGCCGACCCGG
ACAAGGACATCTTCCTCTACATCAACAGCCCCGGTGGCTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCCGCCTCGATGGGCCAGTTCCTGCTGACCGGCGGCTCCGCGGG
CAAGCGCTTCGCGCTCCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGTACCGCCTCCGACGTCA
AGATCCAGGCCGAGTACCTGCTCCGTACGAAGCAGCGCATGGCGAGGATCACGGCCGAGCACTCCGGCCAGACCATCGAG
ACGATCATCCGTGACGGTGACCGCGACCGTTGGTACACGGCCGAGGAAGCCAAGGAATACGGCCTCATCGACGAGATCAT
CACTGCCGCTACGGGCGTTCCGGGCGGCGGCGGTACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.814

85.572

0.478
  clpP Lactococcus lactis subsp. cremoris KW2

51.087

91.542

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.099

90.547

0.463
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.543

91.542

0.463
  clpP Streptococcus mutans UA159

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMD-9

51.724

86.567

0.448
  clpP Streptococcus thermophilus LMG 18311

51.724

86.567

0.448
  clpP Streptococcus pyogenes JRS4

51.445

86.07

0.443
  clpP Streptococcus pyogenes MGAS315

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443