Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   V2W30_RS13635 Genome accession   NZ_CP146022
Coordinates   2926921..2927580 (-) Length   219 a.a.
NCBI ID   WP_338696464.1    Uniprot ID   A0ACD5ABL2
Organism   Streptomyces sp. Q6     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2921921..2932580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS13625 (V2W30_13625) - 2924452..2925393 (+) 942 WP_338696462.1 hypothetical protein -
  V2W30_RS13630 (V2W30_13630) clpX 2925478..2926764 (-) 1287 WP_338696463.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V2W30_RS13635 (V2W30_13635) clpP 2926921..2927580 (-) 660 WP_338696464.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V2W30_RS13640 (V2W30_13640) clpP 2927643..2928248 (-) 606 WP_338703597.1 ATP-dependent Clp protease proteolytic subunit Regulator
  V2W30_RS13645 (V2W30_13645) tig 2928520..2929902 (-) 1383 WP_338696466.1 trigger factor -
  V2W30_RS13660 (V2W30_13660) - 2930452..2931183 (-) 732 WP_338696468.1 GAF domain-containing protein -
  V2W30_RS13665 (V2W30_13665) - 2931234..2932013 (-) 780 WP_338696470.1 GAF and ANTAR domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24120.47 Da        Isoelectric Point: 4.5229

>NTDB_id=854567 V2W30_RS13635 WP_338696464.1 2926921..2927580(-) (clpP) [Streptomyces sp. Q6]
MNNLPGSGLYQGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISIY
INSPGGSFTALTAIYDTMQFVKPDIQTVCMGQASSAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAANE
IIRMRTQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIISTRKMNNEAIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=854567 V2W30_RS13635 WP_338696464.1 2926921..2927580(-) (clpP) [Streptomyces sp. Q6]
ATGAACAACCTCCCCGGCAGCGGCCTGTACCAGGGCCCGCAGGTCGACAACCGCTACGTGATCCCGCGCTTCGTCGAGCG
CACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCG
ACGACGCGTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCCATCTAC
ATCAACAGCCCCGGTGGCTCGTTCACGGCCCTCACGGCCATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCAGAC
GGTCTGCATGGGCCAGGCGTCCTCCGCGGCCGCCGTCCTGCTCGCCGCCGGTACGCCGGGCAAGCGCATGGCCCTGCCGA
ACGCCCGCGTGCTGATCCACCAGCCCTCCGGCGGCACCGGTCGTGAGCAGCTCTCCGACCTGGAGATCGCGGCCAACGAG
ATCATCCGGATGCGTACGCAGCTGGAAGAGATGCTGGCCAAGCACTCGACGACGCCGATCGAGAAGATCCGTGACGACAT
CGAGCGTGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGGTCGACCAGATCATCTCGACCCGCAAGATGA
ACAACGAGGCGATCGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

86.758

0.443
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

85.845

0.42
  clpP Streptococcus pyogenes JRS4

45.455

90.411

0.411
  clpP Streptococcus pyogenes MGAS315

45.455

90.411

0.411
  clpP Streptococcus mutans UA159

44.949

90.411

0.406
  clpP Streptococcus thermophilus LMD-9

44.615

89.041

0.397
  clpP Streptococcus thermophilus LMG 18311

44.615

89.041

0.397
  clpP Streptococcus pneumoniae R6

43.878

89.498

0.393
  clpP Streptococcus pneumoniae TIGR4

43.878

89.498

0.393
  clpP Streptococcus pneumoniae Rx1

43.878

89.498

0.393
  clpP Streptococcus pneumoniae D39

43.878

89.498

0.393
  clpP Lactococcus lactis subsp. cremoris KW2

42.857

89.498

0.384
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

41.837

89.498

0.374