Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U70_RS02580 Genome accession   NZ_CP145868
Coordinates   509990..511726 (+) Length   578 a.a.
NCBI ID   WP_002885969.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 504990..516726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS02555 (V6U70_02555) - 505376..506629 (+) 1254 WP_410532706.1 efflux RND transporter periplasmic adaptor subunit -
  V6U70_RS02560 (V6U70_02560) - 506640..507326 (+) 687 WP_207184709.1 ABC transporter ATP-binding protein -
  V6U70_RS02565 (V6U70_02565) - 507336..508544 (+) 1209 WP_410532708.1 ABC transporter permease -
  V6U70_RS02570 (V6U70_02570) rplJ 508835..509338 (+) 504 WP_410532710.1 50S ribosomal protein L10 -
  V6U70_RS02575 (V6U70_02575) rplL 509413..509781 (+) 369 WP_004183006.1 50S ribosomal protein L7/L12 -
  V6U70_RS02580 (V6U70_02580) rcrP 509990..511726 (+) 1737 WP_002885969.1 ABC transporter ATP-binding protein Regulator
  V6U70_RS02585 (V6U70_02585) rcrQ 511739..513526 (+) 1788 WP_410532712.1 ABC transporter ATP-binding protein Regulator
  V6U70_RS02590 (V6U70_02590) queA 513623..514666 (-) 1044 WP_045769002.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  V6U70_RS02595 (V6U70_02595) - 514817..515518 (+) 702 WP_247922405.1 glucosamine-6-phosphate deaminase -
  V6U70_RS02600 (V6U70_02600) - 515709..516692 (+) 984 WP_037602037.1 rhodanese-related sulfurtransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64863.79 Da        Isoelectric Point: 5.5902

>NTDB_id=854044 V6U70_RS02580 WP_002885969.1 509990..511726(+) (rcrP) [Streptococcus salivarius strain KSS12]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLSYAVSKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=854044 V6U70_RS02580 WP_002885969.1 509990..511726(+) (rcrP) [Streptococcus salivarius strain KSS12]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCTAAGTGGCTAGCAATGAATTTTACAGCGGCTATTTTGTTTGTTAT
TGCTAACCTGGGTCTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGGATTAACCGTGGAGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTCGGTGTGGTCTTGACTGGGATTGTTGGTCGTGTGCTCTTGTCCTATGCGGTTAGTAAGTTG
ACGACTACAATGGTCCAGGTCATGCGTAATGACATTTACGCTAAGCTTCAGGAGTATTCCCACCATGAGTACGAGCAGAT
TGGGGTATCCTCTTTGGTGACTCGTATTACATCTGATGCTTTTGTTCTCATGCAATTTGCAGAACAGATTCTAAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTAATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATTTCCTTGCCTTTCCTAGCCGTAGTAGTCTGGTATGTAGCGGTAAAAACACGTCCGCTTTCTGAGAAGCAACAGGCAAC
ACTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAGCTCTTTAAATTAACTGGTTTGACTGAG
CCACTTTTTGTGCAAATCATCATCGCCATGATTGTGGCAATTGTTTGGTTTGCTCTTGAGCCATTAGGTTCTGGGACGTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCCAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGACATGCCTATTTCTATCAATCCAAATGAA
GATGGGGTGACAGAGACTGAGACTAAGGGATATTTGGAGTTTGACAATGTAACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTCCTACACAATATTTCTTTCAAGGCTAAACCCGGTGAAACCATTGCCTTTATTGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTGGATGTTCGTGAC
TATAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATTCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTCGCTCAGGCGAAGGAATTCATCG
ACAGCAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCTGTGGTTAAACGTCCTGATCTTTACATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAAACTGATGC
GACCTTGCGCCGTCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGTACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTTGGTCGTGGCCGTCACGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCTAATTCTCAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.15

92.215

0.37