Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6U66_RS02515 Genome accession   NZ_CP145864
Coordinates   483410..483838 (+) Length   142 a.a.
NCBI ID   WP_410534552.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 478410..488838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS02495 (V6U66_02500) - 478707..479453 (+) 747 WP_149561043.1 DUF6994 family protein -
  V6U66_RS02500 (V6U66_02505) - 479501..480007 (+) 507 WP_410534549.1 NUDIX hydrolase -
  V6U66_RS02505 (V6U66_02510) - 480190..481470 (+) 1281 WP_410534550.1 McrB family protein -
  V6U66_RS02510 (V6U66_02515) - 481467..482768 (+) 1302 WP_410534551.1 5-methylcytosine restriction system specificity protein McrC -
  V6U66_RS02515 (V6U66_02520) ssb 483410..483838 (+) 429 WP_410534552.1 single-stranded DNA-binding protein Machinery gene
  V6U66_RS02520 (V6U66_02525) - 483917..484765 (+) 849 WP_410534553.1 PD-(D/E)XK nuclease-like domain-containing protein -
  V6U66_RS02525 (V6U66_02530) - 484817..485818 (+) 1002 WP_002887337.1 ERF family protein -
  V6U66_RS02530 (V6U66_02535) - 486011..486148 (+) 138 WP_002887336.1 hypothetical protein -
  V6U66_RS02535 (V6U66_02540) - 486470..486778 (+) 309 WP_002887335.1 hypothetical protein -
  V6U66_RS02540 (V6U66_02545) - 486813..487121 (+) 309 WP_002887334.1 hypothetical protein -
  V6U66_RS02545 (V6U66_02550) - 487134..487310 (+) 177 WP_002887333.1 hypothetical protein -
  V6U66_RS02550 (V6U66_02555) - 487330..487974 (+) 645 WP_410534554.1 JAB domain-containing protein -
  V6U66_RS02555 (V6U66_02560) - 487990..488478 (+) 489 WP_002887331.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15920.63 Da        Isoelectric Point: 4.9269

>NTDB_id=853586 V6U66_RS02515 WP_410534552.1 483410..483838(+) (ssb) [Streptococcus salivarius strain KSS7]
MLNKVIITGRLVADPELRYTPSNKAVATARIASPRDFKNQNGERETDFINLVIWGKYAENFANWIKKGYLVTVEGRLQTR
SYENQQGQKVYVTEVNVSNFDNLQPRDHSNTSSQSSDFGPAEGGFPGGGEPLDDSMFENIPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=853586 V6U66_RS02515 WP_410534552.1 483410..483838(+) (ssb) [Streptococcus salivarius strain KSS7]
ATGCTTAACAAAGTCATTATTACTGGTCGTTTGGTCGCAGATCCGGAACTTCGCTACACACCTTCGAACAAGGCGGTAGC
AACGGCTCGAATCGCCTCTCCCCGTGATTTTAAAAATCAAAATGGAGAGCGGGAGACCGATTTTATTAACCTCGTCATTT
GGGGTAAATATGCAGAGAATTTCGCTAACTGGATCAAGAAAGGCTATCTTGTGACCGTTGAGGGACGGTTGCAAACCCGT
TCTTATGAAAACCAACAAGGCCAAAAGGTCTATGTGACCGAGGTTAATGTGTCAAACTTTGACAATTTACAGCCTCGTGA
CCATAGTAACACTTCTTCGCAAAGTTCAGATTTTGGACCTGCAGAAGGGGGCTTTCCTGGAGGCGGAGAACCTCTAGATG
ATTCTATGTTTGAGAATATTCCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.208

74.648

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.813

75.352

0.451
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.511

92.254

0.401
  ssbB/cilA Streptococcus mitis NCTC 12261

52.83

74.648

0.394
  ssbB Bacillus subtilis subsp. subtilis str. 168

49.55

78.169

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

51.887

74.648

0.387
  ssbB/cilA Streptococcus pneumoniae R6

51.887

74.648

0.387
  ssbB/cilA Streptococcus pneumoniae D39

51.887

74.648

0.387
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.887

74.648

0.387
  ssbB/cilA Streptococcus mitis SK321

50.943

74.648

0.38